Errors on Tags - Target Errors

I. Introduction

This is the detail log for revising the baseline Brat tags. This page describes terms (tokens) are tagged in Brat, but the corrected target terms are spelling error.

II. Revision Program

• Program: ${POST_PROCESS}/bin/PostBrat
• Input Data: ${POST_PROCESS_DATA}/Brat/Baseline/brat
• Output Data: ${POST_PROCESS_DATA}/Brat/BaselineRevised/bratRevised

• In Brat annotation - incorrect spelling for corrected terms
  • shell> PostBrat
1
21
  • manually go through each finding (errOnNonWordTags.data.src.tag)

    Tag	Instance No	Notes
    TAG_ER	4	The original tag is wrong. The corrected term is a spelling error
    TAG_OK_OK	1	The original tag is ok (candidate for Lexicon)
    TAG_OK_ST	16	The original tag is ok (Split)
    TAG_OK_RW	16	The original tag is ok. (Split - real words, add RealWord Tag in Brat)
    TAG_TBD	0	To be done. Zero if complete.

  • Document in here (html)
  • Manually updates to revised Brat (BaselineRevised)

  III. Revision Log

  • Error (4) - (errOnNonWordTags.data.tgt.ER)

    File ID	ErrorType	Position	Original Term	Corrected Term	Notes
    12043	Misspelling	28|38	ciprofaxin	ciproflaxin (-> ciprofloxacin)	1, Change-1
    12800	ToSplit	597|614	catacholomines.he	catecholomines (-> catecholamines). he	2, Change-2
    12800	Misspelling	1027|1035	esphogas	esophogus (-> esophagus)	3, Change-3
    17740	Misspelling	322|336	heperbariatric	hyperbariatric (-> hyperbaric)	Duplicated tag
    61	Punctuation	93|104	bi-coronals	bicoronals (-> bicoronal)	4, Change-4

  • RealWord after Split (2) - (errOnNonWordTags.data.tgt.RW)

    File ID	ErrorType	Position	Original Term	Corrected Term	Notes
    14328	Misspelling	281|286	to.no	too. no	5, Change-5
    30	Misspelling	447|451	cyra	cyra-d	6, Change-6