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Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT.

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Winnenburg R, Mortensen JM, Bodenreider O
J Biomed Semantics. 2015 Mar 28;6:13. doi: 10.1186/s13326-015-0007-3. eCollection 2015.
Abstract: 

BACKGROUND

The NDF-RT (National Drug File Reference Terminology) is an ontology, which describes drugs and their properties and supports computerized physician order entry systems. NDF-RT's classes are mostly specified using only necessary conditions and lack sufficient conditions, making its use limited until recently, when asserted drug-class relations were added. The addition of these asserted drug-class relations presents an opportunity to compare them with drug-class relations that can be inferred using the properties of drugs and drug classes in NDF-RT.

METHODS

We enriched NDF-RT's drug-classes with sufficient conditions, added property equivalences, and then used an OWL reasoner to infer drug-class membership relations. We compared the inferred class relations to the recently added asserted relations derived from FDA Structured Product Labels.

RESULTS

The inferred and asserted relations only match in about 50% of the cases, due to incompleteness of the drug descriptions and quality issues in the class definitions.

CONCLUSIONS

This investigation quantifies and categorizes the disparities between asserted and inferred drug-class relations and illustrates issues with class definitions and drug descriptions. In addition, it serves as an example of the benefits DL can add to ontology development and evaluation.

Winnenburg R, Mortensen JM, Bodenreider O. Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT. J Biomed Semantics. 2015 Mar 28;6:13. doi: 10.1186/s13326-015-0007-3. eCollection 2015.