• Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC. Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics Pacific Symposium on Biocomputing 2007 12:209-220

  Abstract | pub2007002.pdf | PMID:  17990493

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• Ahlers CB, Hristovski D, Kilicoglu H, Rindflesch TC. Using the Literature-based Discovery Paradigm to Investigate Drug Mechanisms AMIA Annu Symp Proc. 2007 Oct 11:6-10

  Abstract | PMID:  18693787 | PMCID:  PMC2655783

  Abstract
• Apostolova E, Channin DS, Demner-Fushman D, Furst J, Lytinen S, Raicu D. Automatic segmentation of clinical texts. 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, 2009, pp. 5905-5908. doi: 10.1109/IEMBS.2009.5334831

  Abstract | PMID:  19965054

  Abstract
• Armstrong K, Liu F, Seymour A, Mazhani L, Littman-Quinn R, Fontelo P, Kovarik C. Evaluation of txt2MEDLINE and development of short messaging service-optimized, clinical practice guidelines in Botswana. Telemed J E Health. 2012 Jan-Feb;18(1):14-7. doi: 10.1089/tmj.2011.0014. Epub 2011 Dec 7.

  Abstract | PMID:  22150636

  Abstract
• Armstrong K, Liu F, Seymour A, Rahman M, Fontelo P, Kovarik C. Design and Evaluation of txt2MEDLINE and SMS Optimized, Searchable Clinical Guidelines for Clinicians in Botswana. Telemedicine J E Health;16(S1):S-93. American Telemedicine Association 15th Annual International Meeting and Exposition; 2010 May 16-18; San Antonio, Texas.

  Abstract | URL:  http://telemedjournal.com/link/teh/2010/vol16/102

  AbstractExternal link
• Aronson AR, Mork J, Lang FM, Rogers W, Jimeno-Yepes A, Sticco JC. The NLM Indexing Initiative: Current Status and Role in Improving Access to Biomedical Information April 2012 Technical Report to the LHNCBC Board of Scientific Counselors.

  Abstract | tr2012001.pdf

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• Aronson AR, Lang FM. The Evolution of MetaMap, a Concept Search Program for Biomedical Text AMIA Annu Symp Proc. 2009 Nov:22

  Abstract | pub2009041.pdf

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• Aronson AR, Mork JG, Neveol A, Shooshan SE, Demner-Fushman D. Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing AMIA Annu Symp Proc. 2008 Nov 6:21-5

  Abstract | PMID:  18998883 | PMCID:  PMC2655934

  Abstract
• Aronson AR, Mork JG, Lang FM, Rogers WJ, Neveol A. NLM Medical Text Indexer: A Tool for Automatic and Assisted Indexing April 2008 Technical Report to the LHNCBC Board of Scientific Counselors.

  Abstract | tr2008002.pdf

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• Aronson AR, Bodenreider O, Demner-Fushman D, Fung KW, Lee VK, Mork JG, Névéol A, Peters L, Rogers WJ. From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. Proc 2007 Workshop BioNL'07, June 2007, pp. 105-112, Prague, Czech Republic.

  Abstract | pub2007040.pdf

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• Aronson AR. API: Semantic Knowledge Representation

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• Aronson AR, Demner-Fushman D, Humphrey SM, Lin J, Liu H, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ. Fusion of Knowledge-intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents Proc TREC 2005, 36-45

  Abstract | pub2005072.pdf

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• Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loane RF, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N. Knowledge-intensive and statistical approaches to the retrieval and annotation of genomics MEDLINE citations. The Thirteenth Text Retrieval Conference (TREC 2004). 2004:503-11.

  Abstract | pub2004-076.pdf

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• Aronson AR, Mork JG, Gay CW, Humphrey SM, Rogers W. The NLM Indexing Initiative's Medical Text Indexer. Stud Health Technol Inform. 2004;107(Pt 1):268-72.

  Abstract | pub2004-077.pdf | PMID:  15360816

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• Aronson AR, Bodenreider O, Chang HF, Humphrey SM, Mork JG, Nelson SJ, Rindflesch TC, Wilbur WJ. The NLM Indexing Initiative. Proc AMIA Symp. 2000:17-21.

  Abstract | pub2000033.pdf | PMID:  11079836 | PMCID:  PMC2243970

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• Banez RJ, Sarmiento R, Marcelo A, Fontelo P, Du B. An SMS Appointment Reminder System for Prenatal Care in Urban Health Care Centers in the Philippines. Telemed J E Health;16(S1):S-38. American Telemedicine Association 15th Annual International Meeting and Exposition; 2010 May 16-18; San Antonio, Texas.

  Abstract | URL:  http://snipurl.com/.66

  AbstractExternal link
• Bangalore AK, Divita G, Humphrey SM, Browne AC, Thorn KE. Automatic Categorization of Google Search Results for Medical Queries using JDI Medinfo 2007: Proc. of the 11th World Congress on Health (Medical) Informatics

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• Bashyam V, Divita G, Bennett DB, Browne AC, Taira RK. A normalized lexical lookup approach to identifying UMLS concepts in free text. Stud Health Technol Inform. 2007;129(Pt 1):545-9.

  Abstract | PMID:  17911776

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• Ben Abacha A, Demner-Fushman D. On the role of question summarization and information source restriction in consumer health question answering. In Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, 2019.

  Abstract | pub9917.pdf

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• Ben Abacha A, Long LR, Seco de Herrera AG, Antani SK, Wang K, Demner-Fushman D. Named Entity Recognition in Functional Neuroimaging Literature. BIBM 2017

  Abstract | URL:  https://ieeexplore.ieee.org/document/8218002

  AbstractExternal link
• Ben Abacha A, Demner-Fushman D. Recognizing Question Entailment for Medical Question Answering. AMIA Annu Symp Proc. 2017 Feb 10;2016:310-318. eCollection 2016.

  Abstract | pub9500.pdf | PMID:  28269825 | PMCID:  PMC5333286

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• Ben Abacha A, Demner-Fushman D. NLM_NIH at SemEval-2017 Task 3: from Question Entailment to Question Similarity for Community Question Answering. In Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval@ACL) 2017: 349-352.

  Abstract | pub9538.pdf

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• Bernhardt PJ, Humphrey SM, Rindflesch TC. Determining Prominent Subdomains in Medicine. AMIA Annu Symp Proc. 2005:46-50.

  Abstract | pub2005052.pdf | PMID:  16778999 | PMCID:  PMC1560510

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• Bhupatiraju R, Fung K, Bodenreider O. MetaMapLite in Excel: Biomedical named-entity recognition for non-technical users. Stud Health Technol Inform (Proc Medinfo): 1252.

  Abstract | PMID:  29295337 | PMCID:  PMC5884681

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• Bodenreider O, Burgun A. Desiderata for an Ontology of Diseases for the Annotation of Biological Datasets Proc ICBO 2009:39-42

  Abstract | pub2009023.pdf

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• Borovikov E, Vajda S, Lingappa G, Antani SK, Thoma GR. Face matching for post-disaster family reunification. IEEE International Conference on Healthcare Informatics. Philadelphia, PA, USA. September 2013.

  Abstract | pub8893.pdf

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• Borovikov E, Lingappa G. Face matching in Lost Person Finder Project. CEB Technical Report. January 2012.

  Abstract | pub8895.pdf

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• Brown AC, Divita G, Lu C, McCreedy L, Nace D. Lexical Systems: A Report to the Board of Scientific Counselors September 2003 Technical Report to the LHNCBC Board of Scientific Counselors.

  Abstract | tr2003003.pdf

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• Browne AC, Kayaalp M, Dodd Z, Sagan, P, McDonald CJ. The Challenges of Creating a Gold Standard for De-identification Research. AMIA Annu Symp Proc. 2014 Nov 14;2014:353-8. eCollection 2014.

  Abstract | pub8927.pdf | PMID:  25954338 | PMCID:  PMC4420002

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• Browne AC, Divita Guy, Aronson AR, McCray AT. Language and Vocabulary Tools AMIA Annu Symp Proc. 2003:798.

  Abstract | pub2003051.pdf | PMID:  14728303 | PMCID:  PMC1480270

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• Burgun A, Bodenreider O. Issues in Integrating Epidemiology and Research Information in Oncology: Experience with ICD-O3 and the NCI Thesaurus AMIA Annu Symp Proc. 2007 Oct 11:85-9

  Abstract | pub2007084.pdf | PMID:  18693803

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• Cairelli M, Rindflesch TC. Hierarchical Summarization of Concepts for Visual Discovery Browsing - a Pilot Study [abstract and demo]. Procedings of the IEEE VisWeek Workshop on Visual Analytics in Healthcare, October 23, 2011, Providence, RI, 37-40.

  Abstract | URL:  http://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=1&ved=0CD0QFjAA&url...

  AbstractExternal link
• Cairelli MJ, Miller CM, Fiszman M, Workman TE, Rindflesch TC. Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox. AMIA Annu Symp Proc. 2013 Nov 16;2013:164-73. eCollection 2013.

  Abstract | PMID:  24551329 | PMCID:  PMC3900170

  Abstract
• Ceccarelli MA, Curioso WH, Liu F, Fontelo P. Do machine translations increase the usefulness of summaries of MEDLINE abstracts? A preliminary study with medical students and physicians in Peru. In: Stud Health Technol Inform [Studies in Health Technology and Informatics] -- MEDINFO 2010: Proceedings of the 13th World Congress on Medical and Health Informatics; 2010 Sep 12-15; Cape Town, South Africa;160:1414.

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• Cohen T, Widdows D, Rindflesch TC. Expansion-by-analogy: A vector symbolic approach to semantic search. AAAI-Fall 2014 Symposium on Quantum Informatics for Cognitive, Social, and Semantic Processes.

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• Cohen T, Widdows D, Schvaneveldt RW, Rindflesch TC. Logical Leaps and Quantum Connectives: Forging Paths through Predication Space AAAI-Fall 2010 Symposium on Quantum Informatics for Cognitive, Social, and Semantic Processes

  Abstract | pub2010028.pdf

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• Cohen T, Schvaneveldt R, Rindflesch TC. Predication-based semantic indexing: permutations as a means to encode predications in semantic space. AMIA Annu Symp Proc. 2009 Nov 14;2009:114-8.

  Abstract | pub2009044.pdf | PMID:  20351833 | PMCID:  PMC2815384

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• Culbertson A, Fiszman M, Shin D, Rindflesch TC. Semantic processing to identify adverse drug event information from black box warnings. AMIA Annu Symp Proc. 2014 Nov 14;2014:442-8. eCollection 2014.

  Abstract | PMID:  25954348 | PMCID:  PMC4419903

  Abstract
• Demner-Fushman D, Mork JG. NLM Medical Text Indexer Technical Report to the LHNCBC Board of Scientific Counselors April 2016

  Abstract | pub9359.pdf

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• Demner-Fushman D, Mork JG, Aronson AR. Mining MEDLINE for problems associated with vitamin D. AMIA Annu Symp Proc. 2013 Nov 16;2013:300-8. eCollection 2013.

  Abstract | PMID:  24551339 | PMCID:  PMC3900180

  Abstract
• Demner-Fushman D, Abhyankar S. Syntactic-semantic frames for clinical cohort identification queries. Data Integration in the Life Sciences (DILS) June 2012, LNBI 7348 proceedings. Lecture Notes in Computer Science. 2012;7348:100-112

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• Demner-Fushman D, Abhyankar S. Syntactic-semantic question frames for cohort identification. The 2012 Joint Summits on Translational Science. San Francisco, CA. March 2012.

  Abstract | pub-2012-071.pdf

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• Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Mork J, Ruch P, Ruiz ME, Smith LH, Wilbur WJ, Aronson AR. Combining Resources to Find Answers to Biomedical Questions Proc TREC 2007, 205-14

  Abstract | pub2007061.pdf

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• Demner-Fushman D, Hauser SE, Humphrey SM, Ford GM, Jacobs JL, Thoma GR. MEDLINE as a Source of Just-in-Time Answers to Clinical Questions. AMIA Annu Symp Proc. 2006:190-4.

  Abstract | pub2006037.pdf | PMID:  17238329 | PMCID:  PMC1839449

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• Demner-Fushman D, Lin J. Answer Extraction, Semantic Clustering, and Extractive Summarization for Clinical Question Answering Proc COLING/ACL 2006. July 2006, Sydney, Australia

  Abstract | pub2006031.pdf

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• Demner-Fushman D, Lin J. Situated Question Answering in the Clinical Domain: Selecting the Best Drug Treatment for Diseases Proc COLING/ACL 2006 Workshop on Task-Focused Summarization and Question Answering, July 2006, Sydney, Australia

  Abstract | pub2006032.pdf

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• Divita G, Rosemblat G, Browne AC. Building a medical Spanish lexicon. AMIA Annu Symp Proc. 2007 Oct 11:941.

  Abstract | PMID:  18694041

  Abstract
• Divita G, Browne AC, Loanne R. dTagger: A POS Tagger AMIA Annu Symp Proc. 2006:200-3

  Abstract | pub2006041.pdf | PMID:  17238331 | PMCID:  PMC1839340

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• Ekong DU, Fontelo P. Prototype telepathology solutions that use the Raspberry Pi and mobile devices. 2017 IEEE Global Humanitarian Technology Conference (GHTC), San Jose CA, 2017: 1-4.

  Abstract

  Abstract
• Fiszman M, Shin D, Sneiderman CA, Jin H, Rindflesch TC. A Knowledge Intensive Approach to Mapping Clinical Narrative to LOINC. AMIA Annu Symp Proc. 2010 Nov 13;2010:227-31.

  Abstract | pub2010029.pdf | PMID:  21346974 | PMCID:  PMC3041410

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