Abhyankar S, Demner-Fushman D, Callaghan FM, McDonald CJ.Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis. J Am Med Inform Assoc. 2014 Sep-Oct;21(5):801-7. doi: 10.1136/amiajnl-2013-001915. Epub 2014 Jan 2.
Abhyankar S, Leishear K, Callaghan FM, Demner-Fushman D, McDonald CJ.Lower short- and long-term mortality associated with overweight and obesity in a large cohort study of adult intensive care unit patients. Crit Care. 2012 Dec 18;16(6):R235. doi: 10.1186/cc11903.
Abhyankar S, Callaghan FM, Demner-Fushman D, McDonald CJ.Using informatics tools to study obesity and outcomes after critical illness. NLM Informatics Training Conference 2011, National Institutes of Health (NIH) Campus, Natcher Conference Center, Bethesda, MD, June 28-30, 2011.
Antani S, Xue Z, Long LR, Bennett D, Ward S, Thoma GR.Is there a need for biomedical CBIR systems in clinical practice? Outcomes from a usability study. Proceedings of SPIE Medical Imaging 2011: Advanced PACS-based Imaging Informatics and Therapeutic Applications. Orlando, FL. February 2011;7967:796708.
Antani S, Cheng J, Long J, Long LR, Thoma GR.Medical Validation and CBIR of Spine X-ray Images over the Internet Proc IS and T/SPIE Electronic Imaging Science and Technology 2006: Internet Imaging VII. San Jose. CA Jan 15-19, 2006, SPIE Vol. 6061 pp. 60610J (1-9).
Antani SK, You D, Simpson M, Rahman M, Demner-Fushman D, Thoma GR.The role of image modality and visual characteristics in archiving biomedical images. Proc of IS&T Archiving Conference. Volume 2013, Number 1, 2013, pp. 31-35.
Antani SK, Demner-Fushman D, Li J, Srinivasan BV, Thoma GR.Exploring Use of Images in Clinical Articles for Decision Support in Evidence-Based Medicine Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150Q(1-10)
Antani SK, Deserno TM, Long LR, Guld MO, Neve L, Thoma GR.Interfacing Global and Local CBIR Systems for Medical Image Retrieval Proc Workshop on Medical Imaging Research (Bildverarbeitung fur die Medizin). March 2007; 166-71.
Antani SK, Natarajan M, Long JL, Long RL, Thoma GR.Developing a Comprehensive System for Content-based Image Retrieval of Image and Text from a National Survey SPIE Medical Imaging, February 2005; San Diego, CA; vol. 5748:152-161.
Antani SK, Long RL, Thoma GR.Applying Vertebral Boundary Semantics to CBIR of Digitized Spine X-Ray Images Proc SPIE Electronic Imaging Science and Technology, Conference on Storage and Retrieval Methods and Applications for Multimedia. 2005;5682:98-107.
Apostolova E, You D, Xue Z, Antani SK, Demner-Fushman D, Thoma GR.Image Retrieval From Scientific Publications: Text and Image Content Processing To Separate Multipanel Figures. JASIST (Journal of the American Society for Information Science and Technology), 64(5):893–908, 2013.
Apostolova E, Channin DS, Demner-Fushman D, Furst J, Lytinen S, Raicu D.Automatic segmentation of clinical texts. 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, 2009, pp. 5905-5908. doi: 10.1109/IEMBS.2009.5334831
Aronson AR, Bodenreider O, Demner-Fushman D, Fung KW, Lee VK, Mork JG, Névéol A, Peters L, Rogers WJ.From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. Proc 2007 Workshop BioNL'07, June 2007, pp. 105-112, Prague, Czech Republic.
Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loane RF, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N.Knowledge-intensive and statistical approaches to the retrieval and annotation of genomics MEDLINE citations. The Thirteenth Text Retrieval Conference (TREC 2004). 2004:503-11.
Ayvas S, Horn J, Hassanzadeh O, Zhu Q, Stan J, Tatonetti NP, Vilar S, Brochhausen M8, Samwald M, Rastegar-Mojarad M, Dumontier M, Boyce RD.Toward a complete dataset of drug-drug interaction information from publicly available sources. J Biomed Inform. 2015 Jun;55:206-17. doi: 10.1016/j.jbi.2015.04.006. Epub 2015 Apr 24.
Bekhuis T, Tseytlin E, Mitchell KJ, Demner-Fushman D.Feature engineering and a proposed decision-support system for systematic reviewers of medical evidence. PLoS One. 2014 Jan 27;9(1):e86277. doi: 10.1371/journal.pone.0086277. eCollection 2014.
Bekhuis T, Demner-Fushman D.Screening nonrandomized studies for medical systematic reviews: a comparative study of classifiers. Artif Intell Med. 2012 Jul;55(3):197-207. doi: 10.1016/j.artmed.2012.05.002. Epub 2012 Jun 5.
Ben Abacha A, Demner-Fushman D.On the Role of Question Summarization and Information Source Restriction in Consumer Health Question Answering. Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, March 25-28, 2019.
Ben Abacha A, Demner-Fushman D.On the role of question summarization and information source restriction in consumer health question answering. In Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, 2019.
Ben Abacha A, Gayen S, Lau JJ, Rajaraman S, Demner-Fushman D.NLM at ImageCLEF 2018 Visual Question Answering in the Medical Domain. CLEF2018 Working Notes. CEUR Workshop Proceedings, Avignon, France, CEUR-WS.org (September 10-14 2018).
Ben Abacha A, De Herrera A, Gayen S, Demner-Fushman D, Antani SK.NLM at ImageCLEF 2017 Caption Task. International Conference of the Cross-Language Evaluation Forum for European Languages 2017 Sep 11 (pp. 358-360). Springer, Cham.
Ben Abacha A, Demner-Fushman D.NLM_NIH at SemEval-2017 Task 3: from Question Entailment to Question Similarity for Community Question Answering. In Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval@ACL) 2017: 349-352.
Ben Abacha A, Demner-Fushman D.Meta-Learning with Selective Data Augmentation for Medical Entity Recognition. International Journal of Computational Linguistics and Applications (IJCLA) 7(2): 167-182 (2016)
Borovikov E, Yershov S.On Virtual Characters that Can See 7th Annual International Conference on Biologically Inspired Cognitive Architectures, BICA 2016, held July 16 to July 19, 2016 in New York City, NY, USA
Borovikov E, Vajda S, Lingappa G, Antani SK, Thoma GR.Face matching for post-disaster family reunification. IEEE International Conference on Healthcare Informatics. Philadelphia, PA, USA. September 2013.
Bryant B, Sari-Sarraf H, Long LR, Antani SK.A Kernel Support Vector Machine Trained Using Approximate Global and Exhaustive Local Sampling. Proceedings of the 4th IEEE/ACM International Conference on Big Data Computing, Applications and Technologies (BDCAT) 2017, Austin, Texas, USA, December 2017. Pp. 267-8 DOI: https://doi.org/10.1145/3148055.3149206
Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald C.Analysis of data that has been extracted from free-text using natural language processing: a likelihood model for misclassification with an application to medical informatics. International Conference on Advances in Interdisciplinary Statistics and Combinatorics (AISC2012), Greensboro, NC, October 2012
Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald CJ.NLP-derived information improves the estimates of risk of disease compared to estimates based on manually extracted data alone. 5th International Symposium on Semantic Mining in Biomedicine (SMBM 2012), 2012 Sept 3-4, Zurich, Switzerland.