• Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC. Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics Pacific Symposium on Biocomputing 2007 12:209-220

  Abstract | pub2007002.pdf | PMID:  17990493

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• Ahlers CB, Hristovski D, Kilicoglu H, Rindflesch TC. Using the Literature-based Discovery Paradigm to Investigate Drug Mechanisms AMIA Annu Symp Proc. 2007 Oct 11:6-10

  Abstract | PMID:  18693787 | PMCID:  PMC2655783

  Abstract
• Antani SK, You D, Simpson M, Rahman M, Demner-Fushman D, Thoma GR. The role of image modality and visual characteristics in archiving biomedical images. Proc of IS&T Archiving Conference. Volume 2013, Number 1, 2013, pp. 31-35.

  Abstract | pub9140.pdf

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• Apostolova E, Channin DS, Demner-Fushman D, Furst J, Lytinen S, Raicu D. Automatic segmentation of clinical texts. 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, 2009, pp. 5905-5908. doi: 10.1109/IEMBS.2009.5334831

  Abstract | PMID:  19965054

  Abstract
• Aronson AR, Lang FM. The Evolution of MetaMap, a Concept Search Program for Biomedical Text AMIA Annu Symp Proc. 2009 Nov:22

  Abstract | pub2009041.pdf

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• Aronson AR, Mork JG, Neveol A, Shooshan SE, Demner-Fushman D. Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing AMIA Annu Symp Proc. 2008 Nov 6:21-5

  Abstract | PMID:  18998883 | PMCID:  PMC2655934

  Abstract
• Aronson AR, Bodenreider O, Demner-Fushman D, Fung KW, Lee VK, Mork JG, Névéol A, Peters L, Rogers WJ. From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. Proc 2007 Workshop BioNL'07, June 2007, pp. 105-112, Prague, Czech Republic.

  Abstract | pub2007040.pdf

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• Aronson AR, Demner-Fushman D, Humphrey SM, Lin J, Liu H, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ. Fusion of Knowledge-intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents Proc TREC 2005, 36-45

  Abstract | pub2005072.pdf

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• Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loane RF, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N. Knowledge-intensive and statistical approaches to the retrieval and annotation of genomics MEDLINE citations. The Thirteenth Text Retrieval Conference (TREC 2004). 2004:503-11.

  Abstract | pub2004-076.pdf

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• Aronson AR, Mork JG, Gay CW, Humphrey SM, Rogers W. The NLM Indexing Initiative's Medical Text Indexer. Stud Health Technol Inform. 2004;107(Pt 1):268-72.

  Abstract | pub2004-077.pdf | PMID:  15360816

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• Aronson AR, Bodenreider O, Chang HF, Humphrey SM, Mork JG, Nelson SJ, Rindflesch TC, Wilbur WJ. The NLM Indexing Initiative. Proc AMIA Symp. 2000:17-21.

  Abstract | pub2000033.pdf | PMID:  11079836 | PMCID:  PMC2243970

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• Bakker TA, Ryce AN, Logan RA, Tse T, Hutcherson LY. A Consumer Health Informatics (CHI) Toolbox: Challenges and Implications AMIA Annu Symp Proc. 2005:21-5

  Abstract | pub2005071.pdf | PMID:  16778994 | PMCID:  PMC1479846

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• Balkanyi L, Schulz S, Cornet R, Bodenreider O. Medical concept representation: the years beyond 2000 [Poster]. Stud Health Technol Inform. 2013;192:1011.

  Abstract | PMID:  23920785 | PMCID:  PMC4300111

  Abstract
• Bangalore A, Browne AC, Divita G. UMLSKS SUGGEST: an auto-complete feature for the UMLSKS interface using AJAX. AMIA Annu Symp Proc. 2006:851.

  Abstract | PMID:  17238471 | PMCID:  PMC1839508

  Abstract
• Bangalore AK, Divita G, Humphrey SM, Browne AC, Thorn KE. Automatic Categorization of Google Search Results for Medical Queries using JDI Medinfo 2007: Proc. of the 11th World Congress on Health (Medical) Informatics

  Abstract

  Abstract
• Bashyam V, Divita G, Bennett DB, Browne AC, Taira RK. A normalized lexical lookup approach to identifying UMLS concepts in free text. Stud Health Technol Inform. 2007;129(Pt 1):545-9.

  Abstract | PMID:  17911776

  Abstract
• Beaudoin DE, Rocha RA, Tse T. Enhancing Access to Patient Education Information: A Pilot Usability Study AMIA Annu Symp Proc. 2005:892

  Abstract | pub2005045.pdf | PMID:  16779179 | PMCID:  PMC1560886

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• Ben Abacha A, Demner-Fushman D. On the Role of Question Summarization and Information Source Restriction in Consumer Health Question Answering. Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, March 25-28, 2019.

  Abstract | pub9923.pdf

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• Ben Abacha A, Demner-Fushman D. On the role of question summarization and information source restriction in consumer health question answering. In Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, 2019.

  Abstract | pub9917.pdf

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• Ben Abacha A, Long LR, Seco de Herrera AG, Antani SK, Wang K, Demner-Fushman D. Named Entity Recognition in Functional Neuroimaging Literature. BIBM 2017

  Abstract | URL:  https://ieeexplore.ieee.org/document/8218002

  AbstractExternal link
• Ben Abacha A, De Herrera A, Gayen S, Demner-Fushman D, Antani SK. NLM at ImageCLEF 2017 Caption Task. International Conference of the Cross-Language Evaluation Forum for European Languages 2017 Sep 11 (pp. 358-360). Springer, Cham.

  Abstract | pub9539.pdf

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• Ben Abacha A, Agichtein E, Pinter Y, Demner-Fushman D. Overview of the Medical QA Task @ TREC 2017 LiveQA Track. TREC, Gaithersburg, MD, 2017.

  Abstract | pub9773.pdf

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• Ben Abacha A, Demner-Fushman D. Recognizing Question Entailment for Medical Question Answering. AMIA Annu Symp Proc. 2017 Feb 10;2016:310-318. eCollection 2016.

  Abstract | pub9500.pdf | PMID:  28269825 | PMCID:  PMC5333286

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• Ben Abacha A, Demner-Fushman D. NLM_NIH at SemEval-2017 Task 3: from Question Entailment to Question Similarity for Community Question Answering. In Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval@ACL) 2017: 349-352.

  Abstract | pub9538.pdf

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• Bernhardt PJ, Humphrey SM, Rindflesch TC. Determining Prominent Subdomains in Medicine. AMIA Annu Symp Proc. 2005:46-50.

  Abstract | pub2005052.pdf | PMID:  16778999 | PMCID:  PMC1560510

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• Bhupatiraju R, Huser V, Fung K. Phenotype modelling tools utilizing standardized EHR data in a Common Data Model format [Poster]. NIH Research Festival 2017.

  Abstract | pub9631.pdf

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• Bhupatiraju R, Fung K, Bodenreider O. MetaMapLite in Excel: Biomedical named-entity recognition for non-technical users. Stud Health Technol Inform (Proc Medinfo): 1252.

  Abstract | PMID:  29295337 | PMCID:  PMC5884681

  Abstract
• Bodenreider O, Peters L, Nguyen T. RxClass – Navigating between Drug Classes and RxNorm Drugs (Demo). Prc. ICBO 2014

  Abstract | URL:  http://ceur-ws.org/Vol-1327/icbo2014_paper_49.pdf

  AbstractExternal link
• Bodenreider O, Burgun A. Desiderata for an Ontology of Diseases for the Annotation of Biological Datasets Proc ICBO 2009:39-42

  Abstract | pub2009023.pdf

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• Browne AC, Kayaalp M, Dodd Z, Sagan, P, McDonald CJ. The Challenges of Creating a Gold Standard for De-identification Research. AMIA Annu Symp Proc. 2014 Nov 14;2014:353-8. eCollection 2014.

  Abstract | pub8927.pdf | PMID:  25954338 | PMCID:  PMC4420002

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• Browne AC, Divita Guy, Aronson AR, McCray AT. Language and Vocabulary Tools AMIA Annu Symp Proc. 2003:798.

  Abstract | pub2003051.pdf | PMID:  14728303 | PMCID:  PMC1480270

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• Burgun A, Bodenreider O. Issues in Integrating Epidemiology and Research Information in Oncology: Experience with ICD-O3 and the NCI Thesaurus AMIA Annu Symp Proc. 2007 Oct 11:85-9

  Abstract | pub2007084.pdf | PMID:  18693803

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• Cairelli M, Rindflesch TC. Identifying Potential Biomarkers for Mild Traumatic Brain Injury by Mining Semantic Relations from MEDLINE Citations [Poster[. 2011 Trauma Spectrum Conference, Bethesda, MD, December 9, 2011.

  Abstract

  Abstract
• Cairelli M, Rindflesch TC. Hierarchical Summarization of Concepts for Visual Discovery Browsing - a Pilot Study [abstract and demo]. Procedings of the IEEE VisWeek Workshop on Visual Analytics in Healthcare, October 23, 2011, Providence, RI, 37-40.

  Abstract | URL:  http://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=1&ved=0CD0QFjAA&url...

  AbstractExternal link
• Cairelli MJ, Miller CM, Fiszman M, Workman TE, Rindflesch TC. Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox. AMIA Annu Symp Proc. 2013 Nov 16;2013:164-73. eCollection 2013.

  Abstract | PMID:  24551329 | PMCID:  PMC3900170

  Abstract
• Chachra S, Xue Z, Antani SK, Demner-Fushman D, Thoma GR. Extraction and Labeling High-resolution Images from PDF Documents. Proc. SPIE 9021, Document Recognition and Retrieval XXI, 90210Q (December 27, 2013). doi:10.1117/12.2042336.

  Abstract | pub7055.pdf

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• Cheng B, Antani SK, Stanley J, Demner-Fushman D, Thoma GR. Automatic segmentation of subfigure image panels for multimodal biomedical document retrieval. Proceeding of: Document Recognition and Retrieval XVIII - DRR 2011, 18th Document Recognition and Retrieval Conference, part of the IS&T-SPIE Electronic Imaging Symposium, San Jose, CA, USA, January 24-29, 2011, Proceedings.

  Abstract | pub2011-120.pdf

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• Cho D, Mork JG, Aronson A, Demner-Fushman D, Schmidt S, Ozga D, Pash J, Kilbourne J. MeSH on demand: an easy way to identify relevant MeSH terms and related articles from text [Poster]. National Cancer Institute (NCI) Symposium "RNA Biology 2015".

  Abstract | pub9358.pdf

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• Cohen T, Widdows D, Rindflesch TC. Expansion-by-analogy: A vector symbolic approach to semantic search. AAAI-Fall 2014 Symposium on Quantum Informatics for Cognitive, Social, and Semantic Processes.

  Abstract

  Abstract
• Cohen T, Widdows D, Schvaneveldt RW, Rindflesch TC. Logical Leaps and Quantum Connectives: Forging Paths through Predication Space AAAI-Fall 2010 Symposium on Quantum Informatics for Cognitive, Social, and Semantic Processes

  Abstract | pub2010028.pdf

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• Cohen T, Schvaneveldt R, Rindflesch TC. Predication-based semantic indexing: permutations as a means to encode predications in semantic space. AMIA Annu Symp Proc. 2009 Nov 14;2009:114-8.

  Abstract | pub2009044.pdf | PMID:  20351833 | PMCID:  PMC2815384

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• Collins H, Calvo SC, Greenberg K, Forman NL, Morrison SM. Using Genetics Home Reference to Reinforce Patient Education [Poster]. American College of Medical Genetics Annual Meeting, Phoenix, AZ, March 21-25, 2017.

  Abstract | pub9564.pdf

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• Culbertson A, Fiszman M, Shin D, Rindflesch TC. Semantic processing to identify adverse drug event information from black box warnings. AMIA Annu Symp Proc. 2014 Nov 14;2014:442-8. eCollection 2014.

  Abstract | PMID:  25954348 | PMCID:  PMC4419903

  Abstract
• Demner-Fushman D, Shooshan SE, Rodriguez L, Antani SK, Thoma GR. Annotation of Chest Radiology Reports for Indexing and Retrieval. Multimodal Retrieval in the Medical Domain 2015 (MRMD 2015), Vienna, Austria, March 29, 2015

  Abstract | pub9218.pdf

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• Demner-Fushman D, Mork JG, Aronson AR. Mining MEDLINE for problems associated with vitamin D. AMIA Annu Symp Proc. 2013 Nov 16;2013:300-8. eCollection 2013.

  Abstract | PMID:  24551339 | PMCID:  PMC3900180

  Abstract
• Demner-Fushman D, Abhyankar S. Syntactic-semantic frames for clinical cohort identification queries. Data Integration in the Life Sciences (DILS) June 2012, LNBI 7348 proceedings. Lecture Notes in Computer Science. 2012;7348:100-112

  Abstract

  Abstract
• Demner-Fushman D, Abhyankar S. Syntactic-semantic question frames for cohort identification. The 2012 Joint Summits on Translational Science. San Francisco, CA. March 2012.

  Abstract | pub-2012-071.pdf

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• Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Mork J, Ruch P, Ruiz ME, Smith LH, Wilbur WJ, Aronson AR. Combining Resources to Find Answers to Biomedical Questions Proc TREC 2007, 205-14

  Abstract | pub2007061.pdf

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• Demner-Fushman D, Lin J. Answer Extraction, Semantic Clustering, and Extractive Summarization for Clinical Question Answering Proc COLING/ACL 2006. July 2006, Sydney, Australia

  Abstract | pub2006031.pdf

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• Demner-Fushman D, Lin J. Situated Question Answering in the Clinical Domain: Selecting the Best Drug Treatment for Diseases Proc COLING/ACL 2006 Workshop on Task-Focused Summarization and Question Answering, July 2006, Sydney, Australia

  Abstract | pub2006032.pdf

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