• Adamusiak T, Bodenreider O. Quality assurance in LOINC using Description Logic. AMIA Annu Symp Proc. 2012;2012:1099-108. Epub 2012 Nov 3.

  Abstract | PMID:  23304386 | PMCID:  PMC3540427

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• An L, Obradovic Z, Smith D, Bodenreider O, Megalooikonomou V. Mining Association Rules among Gene Functions in Clusters of Similar Gene Expression Maps. Workshop proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM09) -- Workshop on Data Mining in Functional Genomics 2009: p. 254-259

  Abstract | PMID:  25635265 | PMCID:  PMC4307020

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• Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau A. Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions Proc ICDM 2006, Workshop on Data Mining in Bioinformatics: IEEE Computer Society Press; 2006. p. 114 - 119

  Abstract | pub2006064.pdf

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• Azuaje FJ, Bodenreider O, Wang H, Dopazo J. Gene Ontology-Driven Similarity for Gene Expression Correlation Analysis Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:47.

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• Bahr NJ, Nelson SD, Winnenburg R, Bodenreider O. Eliciting the Intension of Drug Value Sets - Principles and Quality Assurance Applications. Stud Health Technol Inform. 2017;245:843-847.

  Abstract | PMID:  29295218 | PMCID:  PMC5881398

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• Bangalore A, Thorn KE, Tilley C, Peters L. The UMLS knowledge source server: an object model for delivering UMLS data. AMIA Annu Symp Proc. 2003 Nov;:51-55.

  Abstract | pub2003052.pdf | PMID:  14728132 | PMCID:  PMC1480045

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• Bergun A, Bodenreider O. An ontology of chemical entities helps identify dependence relations among Gene Ontology terms Proc SMBM-2005

  Abstract | pub2005028.pdf

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• Bergun A, Bodenreider O, Mougin F. Classifying diseases with respect to anatomy: a study in SNOMED CT AMIA Annu Symp Proc. 2005:91-5

  Abstract | pub2005030.pdf | PMID:  16779008 | PMCID:  PMC1560776

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• Bodenreider O. Identifying missing hierarchical relations in SNOMED CT from logical definitions based on the lexical features of concept names. Proceedings of the 6th International Conference on Biomedical Ontology (ICBO 2016), 2016: p. (electronic proceedings: http://ceur-ws.org/Vol-1747/IT601_ICBO2016.pdf).

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• Bodenreider O. Multi-lingual features of the Unified Medical Language System. Proc. CLEF-ER 2013 workshop 2013.

  Abstract | 2013-clef_er-ob-abstract.pdf | URL:  http://www.clef2013.org/index.php?page=Pages/proceedings.php

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• Bodenreider O. API: Prescribable

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• Bodenreider O, Peters L, Nguyen T. Browser and application programming interfaces for drug information sources. AMIA Annu Symp Proc, 2011: p. 2129.

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• Bodenreider O. API: NDF-RT

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• Bodenreider O, Demner-Fushman D. Investigating drug classes in biomedical terminologies from the perspective of clinical decision support. AMIA Annu Symp Proc. 2010 Nov 13;2010:56-60.

  Abstract | pub2010006.pdf | PMID:  21346940 | PMCID:  PMC3041355

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• Bodenreider O, Mougin F, Burgun A. Automatic Determination of Anti-coagulation Status with NDF-RT Proceedings of the 13th ISMB'2010 SIG meeting Bio-ontologies 2010:140-143

  Abstract | pub2010003.pdf

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• Bodenreider O, Burgun A. A framework for comparing phenotype annotations of orthologous genes. Stud Health Technol Inform. 2010;160(Pt 2):1309-13.

  Abstract | pub2010005.pdf | PMID:  20841896

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• Bodenreider O. Using SNOMED CT in combination with MedDRA for reporting signal detection and adverse drug reactions reporting. AMIA Annu Symp Proc. 2009 Nov 14;2009:45-9.

  Abstract | pub2009026.pdf | PMID:  20351820 | PMCID:  PMC2815504

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• Bodenreider O. Provenance information in biomedical knowledge repositories – A use case. Proceedings of the First International Workshop on the role of Semantic Web in Provenance Management (SWPM 2009), 2009: p. (electronic proceedings: http://ceur-ws.org/Vol-526/).

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• Bodenreider O. Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies Proc. KR-MED 2008

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• Bodenreider O. Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues In: Bairoch A, Cohen-Boulakia S, Froidevaux C, editors. Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008); Berlin Heidelberg New York: Springer; 2008. p. 1-4

  Abstract | pub2008024.pdf

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• Bodenreider O, Coban ZH, Doganay MC, Erdem E, Kosucu H. A preliminary report on answering complex queries related to drug discovery using answer set programming. Proceedings of the 3rd International Workshop on Applications of Logic Programming to the (Semantic) Web and Web Services (ALPSWS2008), 2008: p. 85-90 (electronic proceedings: http://ceur-ws.org/Vol-434/).

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• Bodenreider O. Issues in Mapping LOINC Laboratory Tests to SNOMED CT AMIA Annu Symp Proc. 2008 Nov 6:51-5

  Abstract | PMID:  18999311 | PMCID:  PMC2655945

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• Bodenreider O, Burgun A. Oncologic Pathology in Biomedical Terminologies: Challenges for Data Integration Proc APIII conference on "Anatomic Pathology Informatics and Imaging Support for Translational Medicine", Pittsburgh, Pennsylvania, September 9-12, 2007:Abstract 342.

  Abstract | pub2007050.pdf

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• Bodenreider O, Zhang S. Comparing the Representation of Anatomy in the FMA and SNOMED CT AMIA Annu Symp Proc. 2006:46-50

  Abstract | pub2006054.pdf | PMID:  17238300 | PMCID:  PMC1839313

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• Bodenreider O. Lexical, Terminological and Ontological Resources for Biological Text Mining Ananiadou S, McNaught J, editors. Text mining for biology and biomedicine: Artech House; 2006. p. 43-66.

  Abstract | pub2006007.pdf

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• Bodenreider O, Burgun A. Linking the Gene Ontology to other biological ontologies Proc ISMB'2005 SIG meeting on Bio-ontologies 2005:17-18

  Abstract | pub2005026.pdf

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• Bodenreider O, Aubry M, Burgun A. Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology Pac Symp Biocomput. 2005:91-102

  Abstract | pub2005006.pdf

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• Bodenreider O, Hayamizu TF, Ringwald M, De Coronado S, Zhang S. Of mice and men: aligning mouse and human anatomies. AMIA Annu Symp Proc. 2005:61-5.

  Abstract | pub2005027.pdf | PMID:  16779002 | PMCID:  PMC1560846

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• Bodenreider O, Aubry M, Burgun A. From Functional Similarity Among Gene Products to Dependence Relations Among Gene Ontology Terms Proc SOFG, 2004:53.

  Abstract | pub2004069.pdf

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• Bodenreider O, Azuaje F. Incorporating Ontology-Driven Similarity Knowledge Into Functional Genomics: An Exploratory Study Proceedings of the 2004 IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE-2004) 2004:317-324.

  Abstract | pub2004066.pdf

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• Bodenreider O, Smith B, Burugn A. The Ontology-Epistemology Divide: A Case Study in Medical Terminology Proceedings of the Third International Conference on Formal Ontology in Information Systems (FOIS2004): IOS Press; 2004. p. 185-195.

  Abstract | pub2004064.pdf

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• Bodenreider O, Mitchell JA. Graphical Visualization and Navigation of Genetic Disease Information AMIA Annu Symp Proc. 2003:792.

  Abstract | pub2003054.pdf | PMID:  14728297 | PMCID:  PMC1479900

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• Bodenreider O. Strength in Numbers: Exploring Redundancy in Hierarchical Relations Across Biomedical Terminologies AMIA Annu Symp Proc. 2003:101-5.

  Abstract | pub2003053.pdf | PMID:  14728142 | PMCID:  PMC1480297

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• Bodenreider O. A Semantic Navigation Tool for the UMLS AMIA Annu Symp Proc. 2000;: 971.

  Abstract | pub2000035.pdf

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• Bodenreider O. Comment les Usagers Accedent a l'Information Medicale Aux USA: l'Exemple de MEDLINEplus [How Consumers Access Health Information in the USA: The MEDLINEplus Example] Innovation et Technologie en Biologie et Medecine. 2000;21(5):286-90.

  Abstract | pub2000036.pdf

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• Bodenreider O, Zweigenbaum P. Strategies d'Identification des Noms Propres a Partir de Nomenclatures Medicales Paralleles Traitement Automatique des Langues. 2000;41(3):727-757.

  Abstract | pub2000037.pdf

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• Bodenreider O. Circular hierarchical relationships in the UMLS: etiology, diagnosis, treatment, complications and prevention. Proc AMIA Symp. 2001:57-61.

  Abstract | pub2001023.pdf | PMID:  11825155 | PMCID:  PMC2243677

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• Bodenreider O, Zweigenbaum P. Identifying Proper Names in Parallel Medical Terminologies Stud Health Technol Inform. 2000;77:443-7

  Abstract | pub2000038.pdf | PMID:  11187591 | PMCID:  PMC1790050

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• Bodenreider O. Using UMLS semantics for classification purposes. Proc AMIA Symp. 2000:86-90.

  Abstract | pub2000034.pdf | PMID:  11079850 | PMCID:  PMC2243905

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• Botti G, Bodenreider O, Burgun A, Le Beux P, Fieschi M. De la Classification à la Connaissance des Maladies: Une Réflexion à Partir de la Classification Internationale des Maladies [From Classification to Knowledge About Diseases: Thoughts about the International Classification of Diseases] Innovation et Technologie en Biologie et Médecine. 2000;21(5):291-97.

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• Boyce RD, Voss EA, Huser V, Evans L, Reich C, Duke JD, Tatonetti NP, Lorberbaum T, Dumontier M, Hauben M, Wallberg M. LAERTES: An open scalable architecture for linking pharmacovigilance evidence sources with clinical data. Proc International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016). http://icbo2016.cgrb.oregonstate.edu/node/354.

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• Burgun A, Mougin F, Bodenreider O. Two approaches to integrating phenotype and clinical information. AMIA Annu Symp Proc. 2009 Nov 14;2009:75-9.

  Abstract | pub2009027.pdf | PMID:  20351826 | PMCID:  PMC2815427

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• Cameron D, Kavuluru R, Bodenreider O, Mendes PN, Sheth AP, Thirunarayan K. Semantic predications for complex information needs in biomedical literature BIBM 2011:512-519.

  Abstract | pub2011069.pdf

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• Cardillo E, Hernandez, Jr G, Bodenreider O. Integrating consumer-oriented vocabularies with selected professional ones from the UMLS using Semantic Web Technologies. Proceedings of the eHealth 2010 conference, 2010: p. (paper 10579 - electronic proceedings).

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• Crowell J, Zeng QT, Tse T. A Web Application to Support Consumer Health Vocabulary Development AMIA Annu Symp Proc. 2005:932

  Abstract | pub2005043.pdf

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• Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ, Aronson AR. Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. Proc TREC 2006, 569-76.

  Abstract | pub2006072.pdf

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• Dhombres F, Bodenreider O. Trends in Fetal Medicine: A 10-Year Bibliometric Analysis of Prenatal Diagnosis. Stud Health Technol Inform. 2017;245:853-857.

  Abstract | PMID:  29295220 | PMCID:  PMC5884683

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• Dhombres F, Bodenreider O. Investigating the lexico-syntactic properties of phenotype terms – Application to interoperability between HPO and SNOMED CT. Proc Joint Bio-Ontologies and BioLINK ISMB'2015 SIG session "Phenotype Day" 2015:8-11.

  Abstract | pub9335.pdf

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• Doughty E, Kirk B, Kann MG, Bodenreider O. Integrating Drug-gene Associations Mined from the Literature with Drug Information Sources - A Comparison with PharmGKB Proceedings of the 2011 PSB Workshop on Mining the Pharmacogenomics Literature 2011

  Abstract | LHNCBC-2011-002.pdf

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• Dumontier M, Andersson B, Batchelor C, Domarew C, Jentzsch A, Luciano J, Pichler E, Prud'hommeaux E, Whetzel PL, Bodenreider O, Clark T, Harland L, Kashyap V, Kos P, Kozlovsky J, McGurk J, Ogbuji C, Samwald M, Schriml L, Tonellato PJ, Zhao J, Stephens S. The Translational Medicine Ontology: Driving Personalized Medicine by Bridging the Gap from Bedside to Bench Proceedings of the 13th ISMB'2010 SIG meeting Bio-ontologies 2010:120-123

  Abstract | pub2010004.pdf

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