• Lu C, Aronson, AR, Shooshan SE, Demner-Fushman D. Spell checker for consumer language (CSpell). J Am Med Inform Assoc. 2019 Jan 21. doi: 10.1093/jamia/ocy171. [Epub ahead of print]

  Abstract | PMID:  30668712

  Abstract
• Thoma, GR. Where we’ve been.. And where we’re going. Talk given by George Thoma at his retirement.

  Abstract | pub9882.pdf

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• Peters TM, Linte CA, Yaniv Z, Williams J. Mixed and Augmented Reality in Medicine. CRC Press.

  Abstract | URL:  https://www.crcpress.com/Mixed-and-Augmented-Reality-in-Medicine/Peters-Linte-Ya...

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• Lu C, Demner-Fushman D. Improving Spelling Correction with Consumer Health Terminology Improving Spelling Correction with Consumer Health Terminology AMIA 2018 Annual Symposium, San Francisco, CA, November 3-7, 2018, p. 2053.

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• Candemir S, Rajaraman S, Thoma GR, Antani SK. Deep Learning for Grading Cardiomegaly Severity in Chest X-rays: An Investigation. Proc. IEEE Life Sciences Conference (LSC 2018), Montreal, Quebec, Canada, 28 – 30 October 2018. pp. 109-113.

  Abstract | pub9872.pdf

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• Yaniv Z, Güler Ö, Gong RH. Cost Effective Simulation; A Mixed Reality Approach. Ch. 10 in Mixed and Augmented Reality in Medicine.

  Abstract | URL:  https://www.taylorfrancis.com/books/e/9781351654432/chapters/10.1201%2F978131515...

  AbstractExternal link
• Ben-Zikri Y, Yaniv Z, Baum K, Linte C. A Marker-Free Registration Method for Standing X-ray Panorama Reconstruction for Hip-Knee-Ankle Axis Deformity Assessment. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization

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• Rajaraman S, Candemir S, Kim I, Thoma GR, Antani SK. Visualization and Interpretation of Convolutional Neural Network Predictions in Detecting Pneumonia in Pediatric Chest Radiographs. Appl. Sci. 2018, 8, 1715.

  Abstract | pub9855.pdf

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• Moallem G, Sari-Sarraf H, Poostchi Mohammadabadi M, Maude R, Silamut K, Antani SK, Jaeger S. Detecting and segmenting overlapping red blood cells in microscopic images of thin blood smears. SPIE Medical Imaging, 2018.

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• Sylim P, Liu F, Marcelo A, Fontelo P. Blockchain Technology for Detecting Falsified and Substandard Drugs in Distribution: Pharmaceutical Supply Chain Intervention. JMIR Res Protoc. 2018 Sep 13;7(9):e10163. doi: 10.2196/10163.

  Abstract | PMID:  30213780

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• Ben Abacha A, Gayen S, Lau JJ, Rajaraman S, Demner-Fushman D. NLM at ImageCLEF 2018 Visual Question Answering in the Medical Domain. CLEF2018 Working Notes. CEUR Workshop Proceedings, Avignon, France, CEUR-WS.org (September 10-14 2018).

  Abstract | pub9812.pdf

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• Jaeger S, Antani SK, Rajaraman S, Yang F, Yu H. Malaria Screening: Research into Image Analysis and Deep Learning. Report to the Board of Scientific Counselors September 2018.

  Abstract | pub9865.pdf

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• Jaeger S, Juarez-Espinosa O, Candemir S, Poostchi Mohammadabadi M, Yang F, Kim L, Ding M, Folio L, Antani SK, Gabrielian A, Hurt D, Rosenthal A, Thoma GR. Detecting drug-resistant tuberculosis in chest radiographs International Journal of Computer Assisted Radiology and Surgery https://doi.org/10.1007/s11548-018-1857-9

  Abstract | URL:  https://link.springer.com/content/pdf/10.1007%2Fs11548-018-1857-9.pdf

  AbstractExternal link
• Beare R, Lowekamp B, Yaniv Z. Image Segmentation, Registration and Characterization in R with SimpleITK. J Stat Softw. 2018 Aug;86. pii: 8. doi: 10.18637/jss.v086.i08. Epub 2018 Sep 4.

  Abstract | PMID:  30288153 | PMCID:  PMC6168008

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• McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 14, Use Case – Clinical Genomics Code Systems. in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).

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• McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 5, Use Case – Clinical Genomics Results Reporting in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).

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• Rae A, Kim J, Le DX, Thoma GR. Main Content Detection in HTML Journal Articles. DocEng ’18: ACM Symposium on Document Engineering 2018, August 28–31, 2018, Halifax, NS, Canada. ACM, New York, NY, USA, 4 pages. https://doi.org/10.1145/3209280.3229115

  Abstract | pub9831.pdf

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• Vajda S, Karargyris A, Jaeger S, Santosh KC, Candemir S, Xue Z, Antani SK, Thoma GR. Feature Selection for Automatic Tuberculosis Screening in Frontal Chest Radiographs. J Med Syst. 2018 Jun 29;42(8):146. doi: 10.1007/s10916-018-0991-9.

  Abstract | PMID:  29959539

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• Bodenreider O, Cornet R, Vreeman DJ. Recent Developments in Clinical Terminologies - SNOMED CT, LOINC, and RxNorm. Yearb Med Inform. 2018 Aug;27(1):129-139. doi: 10.1055/s-0038-1667077. Epub 2018 Aug 29.

  Abstract | PMID:  30157516

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• Lowekamp B, Chen D, Yaniv Z, Yoo T. Scalable Simple Linear Iterative Clustering (SSLIC) Using a Generic and Parallel Approach. CoRR, 2018

  Abstract | URL:  https://arxiv.org/abs/1806.08741

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• Rajaraman S, Silamut K, Hossain MA, Ersoy I, Maude RJ, Jaeger S, Thoma GR, Antani SK. Understanding the learned behavior of customized convolutional neural networks toward malaria parasite detection in thin blood smear images. J Med Imaging (Bellingham). 2018 Jul;5(3):034501. doi: 10.1117/1.JMI.5.3.034501. Epub 2018 Jul 18.

  Abstract | pub9809.pdf | PMID:  30035153 | PMCID:  PMC6050500

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• Rajaraman S, Candemir S, Xue Z, Alderson P, Kohli M, Abuya J, Thoma GR, Antani SK. A novel stacked generalization of models for improved TB detection in chest radiographs. Proc. IEEE Engineering in Medicine and Biology Conference (EMBC 2018), Honolulu, Hawaii, 2018. pp. 718-721.

  Abstract | pub9810.pdf

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• Xue Z, Long LR, Jaeger S, Folio L, Thoma GR. Extraction of Aortic Knuckle Contour in Chest Radiographs Using Deep Learning. EMBC 2018.

  Abstract | pub9818.pdf

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• Kim I, Thoma GR. Automated Identification of Potential Conflict-of-Interest in Biomedical Articles Using Hybrid Deep Neural Network. Proc. 14th Int’l Conf. Machine Learning and Data Mining (MLDM 2018), LNAI 10934, pp. 99-112, Newark, NJ, July 2018.

  Abstract | pub9821.pdf

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• Thamizhvani TR, Lakshmanan S, Rajaraman S. Mobile application-based computer-aided diagnosis of skin tumours from dermal images. The Imaging Science Journal, 66:6, 382-391, 2018, DOI: 10.1080/13682199.2018.1492682

  Abstract | pub9811.pdf

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• Xue Z, Rajaraman S, Long LR, Antani SK, Thoma GR. Gender Detection from Spine X-ray Images Using Deep Learning. Proc. IEEE International Symposium on Computer-Based Medical Systems (CBMS), Karlstad, Sweden, 2018. pp. 54-58, DOI:10.1109/CBMS.2018.00017.

  Abstract | pub9781.pdf

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• Kilicoglu H, Rosemblat G, Malicki M, Ter Riet G. Automatic recognition of self-acknowledged limitations in clinical research literature. J Am Med Inform Assoc. 2018 Jul 1;25(7):855-861. doi: 10.1093/jamia/ocy038.

  Abstract | PMID:  29718377 | PMCID:  PMC6016608

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• Kim I, Thoma GR. Automated Identification of Potential Conflict-of-Interest in Biomedical Articles Using Hybrid Deep Neural Network. Proc. 14th Int’l Conf. Machine Learning and Data Mining (MLDM 2018), LNAI 10934, pp. 99-112, Newark, NJ, July 2018.

  Abstract | pub9823.pdf

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• Kim J, Candemir S, Chew E, Thoma GR. Region of Interest Detection in Fundus Images Using Deep Learning and Blood Vessel Information. The 31th IEEE International Symposium on Computer-Based Medical Systems. (IEEE CBMS 2018), pp. 357-362, Karlstad, Sweden, June 2018.

  Abstract | pub9808.pdf

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• McDonald CJ. Logical Observation Identifiers Names and Codes for In Vitro Diagnostic Test; Guidance for Industry and Food and Drug Administration Staff. Silver Spring, Md: Center for Devices and Radiological Health, FDA, 2018.

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• Yao S, Yu H, AliAkbarpour H, Seetharaman G, Palaniappan K. EpiX: A 3D Measurement Tool for Heritage, Archeology, and Aerial Photogrammetry Heritage Preservation, pp. 47-66, 2018.

  Abstract | URL:  https://doi.org/10.1007/978-981-10-7221-5_3

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• Goss FR, Lai KH, Topaz M, Acker WW, Kowalski L, Plasek JM, Blumenthal KG, Seger DL, Slight SP, Fung KW, Chang FY, Bates DW, Zhou L. A value set for documenting adverse reactions in electronic health records. J Am Med Inform Assoc. 2018 Jun 1;25(6):661-669. doi: 10.1093/jamia/ocx139.

  Abstract | PMID:  29253169

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• Yaniv Z, Lowekamp B, Johnson HJ, Beare R. SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research. J Digit Imaging. 2018 Jun;31(3):290-303. doi: 10.1007/s10278-017-0037-8.

  Abstract | PMID:  29181613 | PMCID:  PMC5959828

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• Gartrell K, Brennan CW, Wallen GR, Liu F, Smith KG, Fontelo P. Clinicians' perceptions of usefulness of the PubMed4Hh mobile device application for clinical decision making at the point of care: a pilot study. BMC Med Inform Decis Mak. 2018 May 8;18(1):27. doi: 10.1186/s12911-018-0607-9.

  Abstract | PMID:  29739392 | PMCID:  PMC5941474

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• Sornapudi S, Stanley RJ, Stoecker WV, Almubarak H, Long LR, Antani SK, Thoma GR, Zuna R, Frazier SR. Deep Learning Nuclei Detection in Digitized Histology Images by Superpixels. J Pathol Inform. 2018 Mar 5;9:5. doi: 10.4103/jpi.jpi_74_17. eCollection 2018.

  Abstract | PMID:  29619277 | PMCID:  PMC5869967

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• Fernandez-Repollet E, Locatis CN, De Jesus-Monge WE, Maisiak R, Lie WL. Effects of summer internship and follow-up distance mentoring programs on middle and high school student perceptions and interest in health careers. BMC Med Educ. 2018 May 2;18(1):84. doi: 10.1186/s12909-018-1205-3.

  Abstract | PMID:  29716582 | PMCID:  PMC5930500

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• Santosh KC, Antani SK. Automated chest x-ray screening: Can lung region symmetry help detect pulmonary abnormalities? doi: 10.1109/TMI.2017.2775636 vol. 37, no. 5, 1168-1177.

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• Vreeman DJ, Abhyankar S, McDonald CJ. Re: Unit conversions between LOINC codes Published June 19, 2017 [Letter]. J Am Med Inform Assoc. 2018 May 1;25(5):614-615. doi: 10.1093/jamia/ocx087.

  Abstract | PMID:  29025119

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• Misra D, Gill MJ. FaceMatch: A System for Dynamic Search and Retrieval of Faces. Proc. Archiving 2018. Washington DC. pp. 53-57. DOI: 10.2352/issn.2168-3204.2018.1.0.12.

  Abstract | pub9805.pdf

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• Edinger T, Demner-Fushman D, Cohen AM, Bedrick S, Hersh W. Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval. AMIA Annu Symp Proc. 2018 Apr 16;2017:660-669. eCollection 2017.

  Abstract | PMID:  29854131 | PMCID:  PMC5977655

  Abstract
• Fung K, Xue Z, Ameye F, Gutierrez AR, D'Have A. Achieving Logical Equivalence between SNOMED CT and ICD-10-PCS Surgical Procedures. AMIA Annu Symp Proc. 2018 Apr 16;2017:724-733. eCollection 2017.

  Abstract | PMID:  29854138 | PMCID:  PMC5977651

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• Kayaalp M. Modes of De-identification. AMIA Annu Symp Proc. 2018 Apr 16;2017:1044-1050. eCollection 2017.

  Abstract | pub9526.pdf | PMID:  29854172 | PMCID:  PMC5977668

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• Rajaraman S, Antani SK, Poostchi Mohammadabadi M, Silamut K, Hossain MA, Maude RJ, Jaeger S, Thoma GR. Pre-trained convolutional neural networks as feature extractors toward improved malaria parasite detection in thin blood smear images. PeerJ. 2018 Apr 16;6:e4568. doi: 10.7717/peerj.4568. eCollection 2018.

  Abstract | pub9752.pdf | PMID:  29682411 | PMCID:  PMC5907772

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• Rodriguez L, Morrison SM, Greenberg K, Demner-Fushman D. Mining the literature for genes associated with placenta-mediated maternal diseases. AMIA Annu Symp Proc. 2018 Apr 16;2017:1498-1506. eCollection 2017.

  Abstract | pub9572.pdf | PMID:  29854219 | PMCID:  PMC5977710

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• Bodenreider O. Evaluating the Quality and Interoperability of Biomedical Terminologies Technical Report to the LHNCBC Board of Scientific Counselors April 2018

  Abstract | pub9754.pdf

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• Janakiram C, Chalmers NI, Fontelo P, Huser V, Lopez Mitnik G, Iafolla TJ, Brow AR, Dye BA. Sex and race or ethnicity disparities in opioid prescriptions for dental diagnoses among patients receiving Medicaid. J Am Dent Assoc. 2018 Apr;149(4):246-255. doi: 10.1016/j.adaj.2018.02.010

  Abstract | PMID:  29599018

  Abstract
• Rodriguez L, Demner-Fushman D. Extracting Diseases Co-occurring with Past Medical History of Lyme Disease. AMIA 2018 Informatics Summit

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• Huser V, Shmueli-Blumberg D. Data sharing platforms for de-identified data from human clinical trials. Clin Trials. 2018 Apr 1:1740774518769655. doi: 10.1177/1740774518769655. [Epub ahead of print]

  Abstract | PMID:  29676586

  Abstract
• Gimbel RW, Pirrallo RG, Lowe SC, Wright DW, Zhang L, Woo MJ, Fontelo P, Liu F, Connor Z. Effect of clinical decision rules, patient cost and malpractice information on clinician brain CT image ordering: a randomized controlled trial. BMC Med Inform Decis Mak. 2018 Mar 12;18(1):20. doi: 10.1186/s12911-018-0602-1.

  Abstract | PMID:  29530029 | PMCID:  PMC5848437

  Abstract
• Xue Z, Jaeger S, Antani SK, Long LR, Karargyris A, Siegelman J, Folio L, Thoma GR. Localizing tuberculosis in chest radiographs with deep learning. Proc SPIE 10579, Medical Imaging 2018: Imaging Informatics for Healthcare, Research, and Applications, 105790U (6 March 2018) pp. doi: 10.1117/12.2293022

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