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  • Yang F, Quizon N, Silamut K, Maude RJ, Jaeger S, Antani SK. Cascading YOLO: Automated Malaria Parasite Detection for Plasmodium Vivax in Thin Blood Smears. To be presented at SPIE Medical Imaging, Feb.18-20, 2020, Houston, USA.
  • Sarrouti M, Quatik EL, Alaoui S. SemBioNLQA: A semantic biomedical question answering system for retrieving exact and ideal answers to natural language questions. Artif Intell Med. 2020 Jan;102:101767. doi: 10.1016/j.artmed.2019.101767. Epub 2019 Nov 28.
  • Goodwin T, Demner-Fushman D. Deep Learning from Incomplete Data: Detecting Imminent Risk of Hospital-acquired Pneumonia in ICU Patients. Proceedings of the AMIA 2019 Annual Symposium, Washington, DC, USA, November 17-20, 2019.
  • Zeiss CJ, Donwook S, Vander Wyk B, Beck AP, Zatz N, Sneiderman CA, Kilicoglu H. Menagerie: A text-mining tool to support animal-human translation in neurodegeneration research. PLoS One. 2019 Dec 17;14(12):e0226176. doi: 10.1371/journal.pone.0226176. eCollection 2019.
  • Ben Abacha A, Hasan SA, Datls W, Liu J, Demner-Fushman D, Muller H. VQA-Med: Overview of the medical visual question answering task at imageclef 2019. CEUR Workshop Proceedings, 9-12, 2019.
  • Mrabet Y, Demner-Fushman D. On Agreements in Visual Understanding. 2019 Conference on Neural Information Processing Systems. 2019 Conference on Neural Information Processing Systems, December 8-14, 2019. Vancouver, Canada.
  • Lu C, Payne A, Demner-Fushman D. Classification Types: A New Feature in the SPECIALIST Lexicon MIA 2019 Annual Symposium, Washington, DC, November 16-20, 2019.
  • Lu C, Aronson AR, Shooshan SE, Demner-Fushman D. Spell checker for consumer language (CSpell) Journal of the American Medical Informatics Association, Volume 26, Issue 3, 1 March 2019, Pages 211-218, https://doi.org/10.1093/jamia/ocy171 21 January 2019 (Editor's Choice)
  • Rae A, Savery M, Mork JG, Demner-Fushman D. A High Recall Classifier for Selecting Articles for MEDLINE Indexing. AMIA Fall Symposium, 2019.
  • Yang F, Yu H, Silamut K, Maude RJ, Jaeger S, Antani SK. Parasite Detection in Thick Blood Smears Based on Customized Faster-RCNN. Proceedings of AIPR2019, Washington DC, USA, Oct 15-17, 2019.
  • Yang F, Yu H, Silamut K, Maude R, Jaeger S, Antani SK. Smartphone-Supported Malaria Diagnosis Based on Deep Learning. Proceedings of 10th Workshop on Machine Learning in Medical Imaging (MLMI 2019) in conjunction with MICCAI, Shenzhen, China, Oct 13-17, 2019.
  • Zou J, Antani SK, Thoma G. Unified Deep Neural Network for Segmentation and Labeling of Multi-Panel Biomedical Figures Journal of the Association for Information Science and Technology (JASIST), 2019
  • Zou J. Unified Deep Neural Network for Segmentation and Labeling of Multi-Panel Biomedical Figures Journal of the Association for Information Science and Technology (JASIST), 2019
  • Demner-Fushman D, Mrabet Y, Ben Abacha A. Consumer health information and question answering: helping consumers find answers to their health-related information needs. JAMIA, 2019.
  • Rosemblat G, Fiszman, M, Shin D, Kilicoglu H. Towards a characterization of apparent contradictions in the biomedical literature using context analysis. Journal of Biomedical Informatics. 2019. In Press. https://doi.org/10.1016/j.jbi.2019.103275.
  • Ben Abacha A, Mrabet Y, Sharp M, Goodwin T, Shooshan S, Demner-Fushman D. Bridging the Gap Between Consumers’ Medication Questions and Trusted Answers. Stud Health Technol Inform. 2019 Aug 21;264:25-29. doi: 10.3233/SHTI190176.
  • Kho SU, Sheth A, Bodenreider O. Automatic Identification of Individual Drugs in Death Certificates. Stud Health Technol Inform. 2019 Aug 21;264:183-187. doi: 10.3233/SHTI190208.
  • Vasilakes J, Fan Y, Rizvi R, Bompelli A, Bodenreider O, Zhang R. Normalizing Dietary Supplement Product Names Using the RxNorm Model. Stud Health Technol Inform. 2019 Aug 21;264:408-412. doi: 10.3233/SHTI190253.
  • Divita G, Rosemblat G, Browne AC. Building a medical Spanish lexicon. AMIA Annu Symp Proc. 2007 Oct 11:941.
  • Ben Abacha A, Shivade C, Demner-Fushman D. Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering. Proceedings of the 18th BioNLP Workshop and Shared Task, Florence, Italy, August 1, 2019.
  • Ben Abacha A, Shivade C, Demner-Fushman D. Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering. Proceedings of the BioNLP 2019 workshop.
  • Demner-Fushman D, Cohen KB, Ananiadou S, Tsujii J. Sesame Street at BioNLP 2019. Proceedings of the BioNLP 2019 workshop.
  • Ganesan P, Rajaraman S, Long LR, Ghoraani B, Antani SK. Assessment of Data Augmentation Strategies Toward Performance Improvement of Abnormality Classification in Chest Radiographs. Proc. IEEE Engineering in Medicine and Biology Conference (EMBC), Berlin, Germany, 23 – 27 July 2019. pp. 841 – 844.
  • Ganesan P, Xue Z, Singh S, Long LR, Ghoraani B, Antani SK. Performance Evaluation of a Generative Adversarial Network for Deblurring Mobile-phone Cervical Images. Proc. IEEE Engineering in Medicine and Biology Conference (EMBC), Berlin, Germany, 23 – 27 July 2019. pp. 4487 – 4490.
  • Rajaraman S, Sornapudi S, Kohli M, Antani SK. Assessment of an ensemble of machine learning models toward abnormality detection in chest radiographs. Proc. IEEE Engineering in Medicine and Biology Conference (EMBC), Berlin, Germany, 23 – 27 July 2019. pp. 3689 – 3692.
  • Kim J, Tran L, Chew E, Antani SK. Optic Disc and Cup Segmentation for Glaucoma Characterization Using Deep Learning 2019 IEEE 32th International Symposium on Computer-Based Medical Systems (CBMS), pp 489-494, Cordoba, Spain, June 2019.
  • Ben Abacha A, Demner-Fushman D. On the Summarization of Consumer Health Questions. Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics, Florence, Italy 2019.
  • Allam A, Magy M, Thoma G, Krauthammer M. Neural networks versus Logistic regression for 30 days all-cause readmission prediction. Sci Rep. 2019 Jun 26;9(1):9277. doi: 10.1038/s41598-019-45685-z.
  • Chowdhuri S, McCrea S, Demner-Fushman D, Overby TC. Extracting Biomedical Terms from Postpartum Depression Online Health Communities. AMIA Jt Summits Transl Sci Proc. 2019 May 6;2019:592-601.
  • Zhang XA, Yates A, Vasilevsky N, Gourdine JP, Callahan TJ, Carmody LC, Danis D, Joachimiak MP, Ravanmehr V, Pfaff ER, Champion J, Robasky K, Xu H, Fecho K, Walton NA, Zhu RL, Ramsdill J, Mungall CJ, Kohler S, Haendel MA, McDonald CJ, Vreeman DJ, Peden DB, Bennett TD, Feinstein JA, Martin B, Stefanski AL, Hunter LE, Chute CG, Robinson PN. Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. NPJ Digit Med. 2019;2. pii: 32. doi: 10.1038/s41746-019-0110-4. Epub 2019 May 2.
  • Kim I, Rajaraman S, Antani SK. Visual Interpretation of Convolutional Neural Network Predictions in Classifying Medical Image Modalities. Diagnostics (Basel). 2019 Apr 3;9(2). pii: E38. doi: 10.3390/diagnostics9020038.
  • Guo P, Singh S, Xue Z, Long LR, Antani SK. Deep Learning for Assessing Image Focus for Automated Cervical Cancer Screening. 2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) DOI: 10.1109/BHI.2019.8834495.
  • Ben Abacha A, Demner-Fushman D. On the Role of Question Summarization and Information Source Restriction in Consumer Health Question Answering. Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, March 25-28, 2019.
  • Kim J, Tran L, Chew E, Antani SK, Thoma GR. Optic Disc Segmentation in Fundus Images Using Deep Learning. SPIE Medical Imaging 2019: Imaging Informatics for Healthcare, Research, and Applications, Vol. 10954, San Diego, USA, February 2019.
  • Zolnoori M, Fung K, Patrick DB, Fontelo P, Kharrazi H, Faiola A, Shah ND, Shirley WYS, Eldredge CE, Luo J, Conway M, Zhu J, Park SK, Xu K, Moayyed H. The PsyTAR dataset: From patients generated narratives to a corpus of adverse drug events and effectiveness of psychiatric medications. Data Brief. 2019 Mar 15;24:103838. doi: 10.1016/j.dib.2019.103838. eCollection 2019 Jun.
  • Rajaraman S, Candemir S, Thoma G, Antani SK. Visualizing and explaining deep learning predictions for pneumonia detection in pediatric chest radiographs. Proc. SPIE 10950, Medical Imaging 2019: Computer-Aided Diagnosis, 109500S (13 March 2019); doi: 10.1117/12.2512752.
  • Kilicoglu H, Peng Z, Tafreshi S, Tran T, Rosemblat G, Schneider J. Confirm or Refute?: A Comparative Study on Citation Sentiment Classification in Clinical Research Publications. J Biomed Inform. 2019 Feb 9:103123. doi: 10.1016/j.jbi.2019.103123.
  • Candemir S, Antani SK. A review on lung boundary detection in chest X-rays. Int J Comput Assist Radiol Surg. 2019 Feb 7. doi: 10.1007/s11548-019-01917-1.
  • Ben Abacha A, Demner-Fushman D. On the role of question summarization and information source restriction in consumer health question answering. In Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, 2019.
  • Zolnoori M, Fung K, Patrick TB, Fontelo P, Kharrazi H, Faiola A, Wu YSS, Eldredge CE, Luo J, Conway M, Zhu J, Park SK, Xu K, Moayyed H, Goudarzvand S. A systematic approach for developing a corpus of patient reported adverse drug events: A case study for SSRI and SNRI medications. NCBINCBI Logo Skip to main content Skip to navigation Resources How To About NCBI Accesskeys PubMed US National Library of Medicine National Institutes of Health Search databaseSearch term 30611893[uid] Clear inputSearch Create RSSCreate alertAdvancedHelp Result Filters Format: AbstractSend to J Biomed Inform. 2019 Feb;90:103091. doi: 10.1016/j.jbi.2018.12.005. Epub 2019 Jan 4.
  • Lu C, Aronson, AR, Shooshan SE, Demner-Fushman D. Spell checker for consumer language (CSpell). J Am Med Inform Assoc. 2019 Jan 21. doi: 10.1093/jamia/ocy171. [Epub ahead of print]
  • Hu L, Bell D, Antani SK, Xue Z, Yu K, Horning MP, Gachuhi N, Wilson B, Jaiswal MS, Befano B, Long LR, Herrero R, Einstein MH, Burk RD, Demarco M, Gage JC, Wentzensen N, Schiffman M. An Observational Study of Deep Learning and Automated Evaluation of Cervical Images for Cancer Screening. J Natl Cancer Inst. 2019 Jan 10. doi: 10.1093/jnci/djy225
  • Scarton LA, Wang L, Kilicoglu H, Jahries M, Del Fiol M. Expanding vocabularies for complementary and alternative medicine therapies. Int J Med Inform. 2019 Jan;121:64-74. doi: 10.1016/j.ijmedinf.2018.11.009. Epub 2018 Nov 22.
  • Rindflesch TC, Blake CL, Cairelli MJ, Fiszman M, Zeiss CJ, Kilicoglu H. Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing. J Biomed Semantics. 2018 Dec 27;9(1):25. doi: 10.1186/s13326-018-0192-y.
  • Jaeger S, Juarez-Espinosa OH, Candemir S, Poostchi M, Yang F, Kim L, Ding M, Folio LR, Antani SK, Gabrielian A, Hurt D, Rosenthal A, Thoma GR. Detecting drug-resistant tuberculosis in chest radiographs. Int J Comput Assist Radiol Surg. 2018 Dec;13(12):1915-1925. doi: 10.1007/s11548-018-1857-9. Epub 2018 Oct 3.
  • Thoma, GR. Where we’ve been.. And where we’re going. Talk given by George Thoma at his retirement.
  • Lau JJ, Gayen S, Ben Abacha A, Demner-Fushman D. A dataset of clinically generated visual questions and answers about radiology images. Sci Data. 2018 Nov 20;5:180251. doi: 10.1038/sdata.2018.251.
  • Demner-Fushman D, Fung K, Do P, Boyce R, Goodwin T. Overview of the TAC 2018 Drug-Drug Interaction Extraction from Drug Labels Track. Proceedings of the Text Analysis Conference (TAC) 2018, Gaithersburg, MD, USA, November 13-14, 2018.
  • Lu C, Demner-Fushman D. Improving Spelling Correction with Consumer Health Terminology Improving Spelling Correction with Consumer Health Terminology AMIA 2018 Annual Symposium, San Francisco, CA, November 3-7, 2018, p. 2053.
  • Lu C, Demner-Fushman D. Improving Spelling Correction with Consumer Health Terminology . AMIA 2018 Annual Symposium, San Francisco, CA, November 3-7, 2018, p. 2053.

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