Ben Abacha A, Demner-Fushman D.On the Role of Question Summarization and Information Source Restriction in Consumer Health Question Answering. Proceedings of the AMIA 2019 Informatics Summit, San Francisco, CA, USA, March 25-28, 2019.
Ben Abacha A, De Herrera A, Gayen S, Demner-Fushman D, Antani SK.NLM at ImageCLEF 2017 Caption Task. International Conference of the Cross-Language Evaluation Forum for European Languages 2017 Sep 11 (pp. 358-360). Springer, Cham.
Raje S, Bodenreider O.Interoperability of disease concepts in clinical and research ontologies – Contrasting coverage and structure in the Disease Ontology and SNOMED CT. Stud Health Technol Inform. 2017;245:925-929.
Yu Z, Nguyen T, Dhombres F, Johnson T, Bodenreider O."Hybrid Topics" - Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words. Stud Health Technol Inform. 2017;245:662-666.
Villegas M, Müller R, De Herrera A, Schaer R, Bromuri S, Gilbert A, Piras L, Wang J, Yan F, Ramisa A, Dellandrea E, Gaizauskas R, Mikolajczyk K, Puigcerver J, Toselli A, Sánchez J, Vidal E.General Overview of ImageCLEF at the CLEF 2016 Labs. CLEF Proceedings, Springer, 2016
Boyce RD, Voss EA, Huser V, Evans L, Reich C, Duke JD, Tatonetti NP, Lorberbaum T, Dumontier M, Hauben M, Wallberg M.LAERTES: An open scalable architecture for linking pharmacovigilance evidence sources with clinical data. Proc International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016). http://icbo2016.cgrb.oregonstate.edu/node/354.
Homer ML, Palmer NP, Bodenreider O, Cami A, Chadwick L, Mandl KD.The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight. AMIA Jt Summits Transl Sci Proc. 2016 Jul 20;2016:105-11. eCollection 2016.
Bodenreider O.Identifying missing hierarchical relations in SNOMED CT from logical definitions based on the lexical features of concept names. Proceedings of the 6th International Conference on Biomedical Ontology (ICBO 2016), 2016: p. (electronic proceedings: http://ceur-ws.org/Vol-1747/IT601_ICBO2016.pdf).
Kury F, Bodenreider O.Desiderata for drug classification systems for their use in analyzing large drug prescription datasets. Proceedings of the 3rd Workshop on Data Mining for Medical Informatics (DMMI 2016), 2016.
Dhombres F, Bodenreider O.Investigating the lexico-syntactic properties of phenotype terms – Application to interoperability between HPO and SNOMED CT. Proc Joint Bio-Ontologies and BioLINK ISMB'2015 SIG session "Phenotype Day" 2015:8-11.
Demner-Fushman D, Shooshan SE, Rodriguez L, Antani SK, Thoma GR.Annotation of Chest Radiology Reports for Indexing and Retrieval. Multimodal Retrieval in the Medical Domain 2015 (MRMD 2015), Vienna, Austria, March 29, 2015
Fu GE, Bolton NQ, Rosinach LI, Furlong V, Nguyen AP, Sheth O, Bodenreider O, Dumontier M.Exposing provenance metadata using different RDF models. Proceedings of the International Conference on Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2015), 2015: p. (electronic proceedings: http://www.swat4ls.org/wp-content/uploads/2015/10/SWAT4LS_2015_paper_11.pdf).
Fung KW, Richesson R, Bodenreider O.Coverage of rare disease names in standard terminologies and implications for patients, providers, and research. AMIA Annu Symp Proc. 2014 Nov 14;2014:564-72. eCollection 2014.
Rahman MM, You D, Simpson MS, Antani SK, Demner-Fushman D.Interactive Cross and Multimodal Biomedical Image Retrieval Based on Automatic Region-Of-Interest (ROI) Identification and Classification. International Journal of Multimedia Information Retrieval (MMIR) 2014 Sep;3(3):131-146.
Xue Z, You D, Antani SK, Long LR, Demner-Fushman D, Thoma GR.Classification of Visual Signs in Abdominal CT Image Figures in Biomedical Literature. Proc. SPIE. 9039. Medical Imaging 2014: PACS and Imaging Informatics: Next Generation and Innovations. 90390T.
Xue Z, Antani SK, Long LR, Demner-Fushman D, Thoma GR.Classification of CT Figures in Biomedical Articles Based on Body Segments. 2013 IEEE International Conference on Healthcare Informatics (ICHI), pp.264,268, 9-11 Sept. 2013. doi: 10.1109/ICHI.2013.17.
Zhang X, Zou J, Le DX, Thoma GR.Combining Discriminative SVM models for the Improved Recognition of Investigator Names in Medical Articles. Proceedings of SPIE Volume 8658, Document Recognition and Retrieval XX, IS&T/SPIE Electronic Imaging 2013.
Antani SK, You D, Simpson M, Rahman M, Demner-Fushman D, Thoma GR.The role of image modality and visual characteristics in archiving biomedical images. Proc of IS&T Archiving Conference. Volume 2013, Number 1, 2013, pp. 31-35.
Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald C.Analysis of data that has been extracted from free-text using natural language processing: a likelihood model for misclassification with an application to medical informatics. International Conference on Advances in Interdisciplinary Statistics and Combinatorics (AISC2012), Greensboro, NC, October 2012
Rahman MM, You D, Simpson M.An interactive image retrieval framework for biomedical articles based on visual region-of-interest (ROI) identification and classification [Abstract]. The 2nd IEEE Conference on Healthcare Informatics, Imaging, and Systems Biology Analyzing Big Data for Healthcare and Biomedical Sciences (HISB 2012). La Jolla, CA. September 2012.
Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald CJ.NLP-derived information improves the estimates of risk of disease compared to estimates based on manually extracted data alone. 5th International Symposium on Semantic Mining in Biomedicine (SMBM 2012), 2012 Sept 3-4, Zurich, Switzerland.