• Sutton VR, Hauser SE. Preliminary comparison of the SEER and PubMed search engines for answering clinical questions using PubMed on Tap, a PDA-based program for accessing biomedical literature AMIA Annu Symp Proc. 2005:1128

  Abstract | pub2005047.pdf

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• Zeng Q, Kin E, Crowell J, Tse T. A Text Corpora-Based Estimation of the Familiarity of Health Terminology ISBMD, Aveiro, Portugal, 10-11 November 2005:184-92.

  Abstract | pub2005041.pdf

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• Mao S, Nie L, Thoma GR. Unsupervised Style Classification of Document Page Images Proc IEEE International Conference on Image Processing, September 2005, Genova, Italy; Vol. II: 510-13

  Abstract | pub2005019.pdf

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• Rosemblat G, Tse T, Gemoets D, Gillen JE, Ide NC. Supporting Access to Consumer Health Information Across Languages Proc ICML-9, September 20-23, 2005; Salvador, Bahia, Brazil.

  Abstract | pub2005017.pdf

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• Kim J, Le DX, Thoma GR. Automated Labeling Of Biomedical Online Journal Articles In: Callaos N, Lesso W, editors. SCI 2005. Proc 9th World Multiconference on Systemics, Cybernetics and Informatics; 2005 Jul 10-13; Vol. 4; Orlando (FL): International Institute of Informatics and Systemics; c2005. 406-11

  Abstract | pub2005022.pdf

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• Le DX, Thoma GR. Automatically Creating Biomedical Bibliographic Records from Printed Volumes of Old Indexes In: Callaos N, Lesso W, editors. SCI 2005. Proc 9th World Multiconference on Systemics, Cybernetics and Informatics; 2005 Jul 10-13; Vol. 3, Computer Science and Engineering. Orlando (FL): International Institute of Informatics and Systemics; c2005. 267-74

  Abstract | pub2005021.pdf

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• Kim I, Le DX, Thoma GR. Automated Cleanup Processing for Extracting Bibliographic Data from Biomedical Online Journals In: Callaos N, Lesso W, editors. SCI 2005. Proc. 9th World Multiconference on Systemics, Cybernetics and Informatics; 2005 Jul 10-13; Vol. 4; Orlando (FL): International Institute of Informatics and Systemics; c2005. 401-5

  Abstract | pub2005023.pdf

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• Mao S, Misra D, Seamans J, Thoma GR. Design Strategies for a Prototype Electronic Preservation System for Biomedical Documents IS&T Archiving 2005 Conference, April 2005; 48-53.

  Abstract | pub2005012.pdf

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• Thoma GR, Mao S, Misra D. Automated Metadata Extraction to Preserve the Digital Contents of Biomedical Collections Proc VIIP 2005. September 2005. Benidorm, Spain; 214-19

  Abstract | pub2005020.pdf

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• Névéol A, Mork JG, Aronson AR, Darmoni SJ. Evaluation of French and English MeSH indexing systems with a parallel corpus. AMIA Annu Symp Proc. 2005:565-9.

  Abstract | pub2005073.pdf | PMID:  16779103 | PMCID:  PMC1560460

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• Rindflesch TC, Pakhomov SV, Fiszman M, Kilicoglu H, Sanchez VR. Medical facts to support inferencing in natural language processing. AMIA Annu Symp Proc. 2005:634-8.

  Abstract | pub2005054.pdf | PMID:  16779117 | PMCID:  PMC1560850

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• Lynch P, Luan X, Prettyman M, Mericle L, Borkmann E, Schlaifer J. An evaluation of new and old similarity ranking algorithms. Proceedings of the International Conference on Information Technology: Coding and Computing (ITCC’04). 2004;2:148.

  Abstract | pub2004-079.pdf

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• Kayaalp M. Bayesian Methods for Diagnosing Physiological Conditions of Human Subjects from Multivariate Time Series Biosensor Data Physiological Data Modeling Contest, the Twenty-First International Conference on Machine Learning (ICML), 2004 July.

  Abstract | pub2004022.pdf

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• Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loane RF, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N. Knowledge-intensive and statistical approaches to the retrieval and annotation of genomics MEDLINE citations. The Thirteenth Text Retrieval Conference (TREC 2004). 2004:503-11.

  Abstract | pub2004-076.pdf

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• Rosemblat G, Tse T, Gemoets D. Adapting A Monolingual Consumer Health System for Cross-Language Information Retrieval Advances in Knowledge Organization, Proceedings of the Eighth International ISKO Conference. 2004 July;9:315-321.

  Abstract | pub2004013.pdf

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• Zhang S, Mork P, Bodenreider O. Lessons Learned from Aligning two Representations of Anatomy Proc of the First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004); 2004. p. 102-108.

  Abstract | pub2004070.pdf

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• Aronson AR, Mork JG, Gay CW, Humphrey SM, Rogers W. The NLM Indexing Initiative's Medical Text Indexer. Stud Health Technol Inform. 2004;107(Pt 1):268-72.

  Abstract | pub2004-077.pdf | PMID:  15360816

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• Leroy G, Rindflesch TC, Libbus B, Kilicoglu H, Chen H. A Syntactic Parser with Semantic Filtering for Biomedical Text. Proceedings of Pacific Symposium on Biocomputing.

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• Browne AC, Divita Guy, Aronson AR, McCray AT. Language and Vocabulary Tools AMIA Annu Symp Proc. 2003:798.

  Abstract | pub2003051.pdf | PMID:  14728303 | PMCID:  PMC1480270

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• Fiszman M, Rindflesch TC, Kilicoglu H. Interpreting Hypernymic Propositions in an Online Medical Encyclopedia AMIA Annu Symp Proc. 2003:840.

  Abstract | pub2003056.pdf | PMID:  14728345 | PMCID:  PMC1480056

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• Kashyap V. The UMLS Semantic Network and the Semantic Web. AMIA Annu Symp Proc. 2003:351-5.

  Abstract | pub2003061.pdf | PMID:  14728193 | PMCID:  PMC1480032

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• Mitchell JA, Aronson AR, Mork JG, Folk LC, Humphrey SM, Ward JM. Gene Indexing: Characterization and Analysis of NLM's GeneRIFs. AMIA Annu Symp Proc. 2003:460-4.

  Abstract | pub2003058.pdf | PMID:  14728215 | PMCID:  PMC1480312

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• Rindflesch TC, Libbus B, Hristovski D, Aronson AR, Kilicoglu H. Semantic Relations Asserting the Etiology of Genetic Diseases AMIA Annu Symp Proc. 2003:554-8.

  Abstract | pub2003060.pdf | PMID:  14728234 | PMCID:  PMC1480275

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• Hauser SE, Le DX, Thoma GR. Automated Zone Correction in Bitmapped Document Images SPIE: Document Recognition and Retrieval VII. 2000 Jan;3976: 248-58.

  Abstract | pub2000011.pdf

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• Humphrey S, Rindflesch TC, Aronson AR. Automatic Journal Descriptor Indexing Extended to Indexing by UMLS Semantic Type Using the Cosine Document Similarity Measure. Proc. of the 11th SIG/CR Classification Research Workshop. 2000;103-16.

  Abstract | pub2000056.pdf

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• Le DX, Thoma GR. Page Layout Classification Technique for Biomedical Documents Proc. World Multiconference on Systems, Cybernetics and Informatics (SCI). 2000 Jul.;X: 348-52.

  Abstract | pub2000015.pdf

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• Mao S, Kanungo T. Automatic Training of Page Segmentation Algorithms: An Optimization Approach International Conference on Pattern Recognition. 2000 Sept.;:531-534.

  Abstract | pub2000008.pdf

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• Mao S, Kanungo T. Empirical Performance Evaluation of Page Segmentation Algorithms SPIE conference on Document Recognition and Retrieval. 2000 Jan.;:303-314.

  Abstract | pub2000013.pdf

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• Mao S, Kanungo T. Stochastic Language Models for Automatic Acquisition of Lexicons from Printed Bilingual Dictionaries Document Layout Interpretation and Its Application. 2001.

  Abstract | pub2001002.pdf

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• McCray AT, Browne AC, Bodenreider O. The Lexical Properties of the Gene Ontology (GO) Proc AMIA Symp. 2002;:504-8.

  Abstract | pub2002030.pdf | PMID:  12463875 | PMCID:  PMC2244431

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• Pearson G, Moon CW. Bridging Two Biomedical Journal Databases with XML - A Case Study. Proc. 14th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2001 Jul;:309-14.

  Abstract | pub2001005.pdf

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• Rindflesch TC, Rajan J, Hunter L. Extracting Molecular Binding Relationships from Biomedical Text Proc. of the 6th Applied Natural Language Processing Conference. 2000;: 188-95.

  Abstract | pub2000016.pdf

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• Rosemblat G, Gemoets D, Browne AC, Tse T. Machine Translation-Supported Cross Language Information Retrieval for a Consumer Health Resource AMIA Annu Symp Proc. 2003:564-8.

  Abstract | pub2003028.pdf | PMID:  14728236 | PMCID:  PMC1480254

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• Walker FL, Thoma GR. Read it to Me! Proc. 21st National Online Meeting. 2000 May;: 473-83.

  Abstract | pub2000010.pdf

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• Walker FL, Thoma GR. Web-Based Document Image Processing Proc. SPIE: Internet Imaging. 2000 Jan;:268-77.

  Abstract | pub2000014.pdf

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• Hristovski D, Peterlin B, Mitchell JA, Humphrey SM. Improving literature based discovery support by genetic knowledge integration. Stud Health Technol Inform. 2003;95:68-73.

  Abstract | PMID:  14663965

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• Kayaalp M, Aronson AR, Humphrey SM, Ide NC, Tanabe LK, Smith LH, Demner-Fushman D, Loane RF, Mork JG, Bodenreider O. Methods for accurate retrieval of MEDLINE citations in functional genomics. The Twelfth Text Retrieval Conference (TREC 2003). 2003:441-50.

  Abstract | pub2003-077.pdf | URL:  http://trec.nist.gov/pubs/trec12/t12_proceedings.html

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• Weeber M, Mork JG, Aronson AR. Developing a Test Collection for Biomedical Word Sense Disambiguation Proc AMIA Symp. 2001:746-50.

  Abstract | pub2001054.pdf | PMID:  11825285 | PMCID:  PMC2243574

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• Hole WT, Srinivasan S. Discovering Missed Synonymy in a Large Concept-Orientated Methathesaurus AMIA Annu Symp Proc. 2000;():354-8.

  Abstract | pub2000043.pdf | PMID:  11079904

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• McCray AT, Dorfman E, Ripple A, Ide NC, Jha M, Katz DG, Loane RF, Tse T. Usability Issues in Developing a Web-Based Consumer Health Site Proc AMIA Symp. 2000:556-60.

  Abstract | pub2000022.pdf | PMID:  11079945 | PMCID:  PMC2244083

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• Rindflesch TC, Bean CA, Sneiderman CA. Argument Identification for Arterial Branching Predications Asserted in Cardiac Catheterization Reports Proc AMIA Symp. 2000:704-8.

  Abstract | pub2000018.pdf | PMID:  11079975 | PMCID:  PMC2243725

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• Weeber M, Klein H, Aronson AR, Mork JG, de Jong-van den Berg LT, Vos R. Text-Based Discovery in Biomedicine: The Architecture of the DAD-System AMIA Annu Symp Proc. 2000 ;():903-7.

  Abstract | pub2000061.pdf | PMID:  11080015 | PMCID:  PMC2243779

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• Aronson AR, Bodenreider O, Chang HF, Humphrey SM, Mork JG, Nelson SJ, Rindflesch TC, Wilbur WJ. The NLM Indexing Initiative. Proc AMIA Symp. 2000:17-21.

  Abstract | pub2000033.pdf | PMID:  11079836 | PMCID:  PMC2243970

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• McCray AT, Gallagher ME, Flannick MA. Extending the role of metadata in a digital library system. In: Proceedings of the IEEE Forum on Research and Technology Advances in Digital Libraries, pp. 190-9, 1999.

  Abstract | A1999001.pdf

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