Yu Z, Nguyen T, Dhombres F, Johnson T, Bodenreider O."Hybrid Topics" - Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words. Stud Health Technol Inform. 2017;245:662-666.
Lin MC, Vreeman DJ, McDonald CJ, Huff SM.A characterization of local LOINC mapping for laboratory tests in three large institutions. Methods Inf Med. 2011;50(2):105-14. doi: 10.3414/ME09-01-0072. Epub 2010 Aug 20.
Rahman MM, Antani SK, Thoma GR.A Classification-Driven Similarity Matching Framework For Retrieval of Biomedical Images. 11th ACM International Conference on Multimedia Information Retrieval (MIR 2010). 2010:147-154.
Hunt S, Cimino J, Koziol DE.A comparison of clinicians' access to online knowledge resources using two types of information retrieval applications in an academic hospital setting. J Med Libr Assoc. 2013 Jan;101(1):26-31. doi: 10.3163/1536-5050.101.1.005.
Marcelo A, Gavino A, Isip-Tan IT, Apostol-Nicodemus L, Mesa-Gaerlan FJ, Firaza PN, Faustorilla JF Jr., Callaghan FM, Fontelo P.A comparison of the accuracy of clinical decisions based on full-text articles and on journal abstracts alone: a study among residents in a tertiary care hospital. Evid Based Med. 2013 Apr;18(2):48-53. doi: 10.1136/eb-2012-100537. Epub 2012 Jul 10.
Overhage JM, Grannis S, McDonald CJ.A comparison of the completeness and timeliness of automated electronic laboritory reporting and spontaneous reporting of notifiable conditions. Am J Public Health. 2008 Feb;98(2):344-50. Epub 2008 Jan 2
Kroth PJ, Dexter PR, Overhage JM, Knipe C, Hui SL, Belsito A, McDonald CJ.A computerized decision support system improves the accuracy of temperature capture from nursing personnel at the bedside. AMIA Annu Symp Proc. 2006:444-8.
Dexter PR, Perkins S, Overhage JM, Maharry K, Kohler RB, McDonald CJ.A computerized reminder system to increase the use of preventive care for hospitalized patients. N Engl J Med. 2001 Sep 27;345(13):965-70.
Sarmiento RF, Liu F, Fontelo P.A Cross-Language Mobile Resource for Accessing MEDLINE/PubMed Based on an Open-Source, Crowdsourced Controlled Medical Vocabulary for the Philippines. Journal of Mobile Technology in Medicine. 2012 Dec;1:4S:28. DOI: 10.7309/jmtm.50.
Goodwin T, Demner-Fushman D.A customizable deep learning model for nosocomial risk prediction from critical care notes with indirect supervision. Journal of the American Medical Informatics Association, 2020: 27 (4), 567-576.
Mao S, Kim J, Thoma G.A Dynamic Feature Generation System for Automated Metadata Extraction in Preservation of Digital Materials Proc. International Workshop on Document Image Analysis for Libraries (DIAL2004). 2004 Jan;: 225-32.
Locatis CN, Conde JG, Bhagwat MA.A Hands-on Distance Learning Strategy to Increase Access to Bioinformatics Training [Poster]. Research Centers in Minority Institutions (RCMI): 13th RCMI International Symposium on Health Disparities; 2012 Dec 9-13; San Juan, Puerto Rico.
Chachra S, Ben Abacha A, Shooshan SE, Rodriguez L, Demner-Fushman D.A Hybrid Approach to Generation of Missing Abstracts in Biomedical Literature. Proceedings of COLING 2016, the 26th International Conference on Computational Linguistics: Technical Papers: 1093-1100.
Simpson M, Ford G, Antani S, Demner-Fushman D, Thoma GR.A Lightweight Statistics Package for Interactive Publications Poster at 20th NIH Research Festival (TECH-15), September 2007, National Institutes of Health
Biondich PG, Overhage JM, Dexter PR, Downs SM, Lemmon L, McDonald CJ.A modern optical character recognition system in a real world clinical setting: some accuracy and feasibility observations. Proc AMIA Symp. 2002:56-60.
Weiner M, Stump TE, Callahan CM, Lewis JN, McDonald CJ.A practical method of linking data from Medicare claims and a comprehensive electronic medical records system. Int J Med Inform. 2003 Aug;71(1):57-69.
Bodenreider O, Coban ZH, Doganay MC, Erdem E, Kosucu H.A preliminary report on answering complex queries related to drug discovery using answer set programming. Proceedings of the 3rd International Workshop on Applications of Logic Programming to the (Semantic) Web and Web Services (ALPSWS2008), 2008: p. 85-90 (electronic proceedings: http://ceur-ws.org/Vol-434/).
Deardorff A, Masterton K, Roberts K, Kilicoglu H, Demner-Fushman D.A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources. JASIST, 68(7): 1724-1736. doi: 10.1002/asi.23806.
Rossi E, Fontelo P, Ackerman M, Pozzi G, Marceglia S.A Prototype of Mobile app/EHR Communication through Standards for Home Treatment of Transcranial Direct Current Stimulation. International Conference on Healthcare Informatics (ICHI), Dallas TX, 2015. 310-315.
Cohen T, Roberts K, Gururaj AE, Chen X, Pournejati S, Alter G, Hersh WR, Demner-Fushman D, Ohno-Machado L, Lu H.A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax061.
Nelson SJ, Brown SH, Erlbaum MS, Olson N, Powell T, Carlsen B, Carter J, Tuttle MS, Hole WT.A semantic normal form for clinical drugs in the UMLS: early experiences with the VANDF. Proc AMIA Symp. 2002:557-61.
Zhang X, Zou J, Le DX, Thoma GR.A Semi-supervised Learning Method to Classify Grant Support Zone in Web-based Medical Articles Proc SPIE Electronic Imaging Science and Technology, Document Recognition and Retrieval. January 2009;7247:7247 OW(1-8)
Zafar A, Mamlin B, Perkins S, Belsito AM, Overhage JM, McDonald CJ.A simple error classification system for understanding sources of error in automatic speech recognition and human transcription. Int J Med Inform. 2004 Sep;73(9-10):719-30.
Zhang X, Zou J, Le DX, Thoma GR.A Stacked Sequential Learning Method For Investigator Name Recognition From Web-based Medical Articles 17th Document Recognition and Retrieval Conference (SPIE-DR&R). San Jose, CA. January 2010;7534:753404-7