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  • He Y, Kayaalp M. A Comparison of 13 Tokenizers on MEDLINE December 2006 Technical Report.
  • Zweigenbaum P, Demner-Fushman D. Advanced Literature-Mining Tools. In Edwards D, Stajich J, and Hansen D. (Editors). Bioinformatics: Tools and Applications. Springer 2009.
  • Aronson AR. API: Semantic Knowledge Representation
  • Demner-Fushman D, Elhadad N. Aspiring to Unintended Consequences of Natural Language Processing: A Review of Recent Developments in Clinical and Consumer-Generated Text Processing. IMIA Yearbook of Medical Informatics 2016.
  • Lindberg, DAB, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). At the helm of the world's largest biomedical library: 2005 Interviews with Donald A.B. Lindberg, MD Conversations with Medical Informatics Pioneers: An oral history project.
  • Zweigenbaum P, Demner-Fushman D. Bioinformatics: Tools and Applications. Springer 2009.
  • Cohen KB, Demner-Fushman D. Biomedical Natural Language Processing John Benjamins Publishing Company, 2014. DOI: 10.1075/nlp.11
  • Simpson MS, Demner-Fushman D. Biomedical Text Mining: A Survey of Recent Progress. In Charu C. Aggarwal and ChengXiang Zhai, Editors. Mining Text Data. (Springer) 2011.
  • Kayaalp M, Browne AC, Dodd Z, Sagan P, McDonald CJ. Clinical Text De-Identification Research September 2013 Technical Report to the LHNCBC Board of Scientific Counselors
  • Demner-Fushman D. Clinical, Consumer Health, and Visual Question Answering. Springer Nature Switzerland AG 2019. J. A. Lossio-Ventura et al. (Eds.): SIMBig 2018, CCIS 898, pp. 1–6, 2019.
  • Zarin DA, Williams RJ, Bergeris AM, Dobbins H, Ide NC, Loane RF, Robbins A, Tse T. ClinicalTrials.gov and Related Projects: Improving Access to Information about Clinical Trials April 2013 Technical Report to the LHNCBC Board of Scientific Counselors
  • Ripple AM, Tse T, Zarin D. ClinicalTrials.gov scope expanded NLM Tech Bull. 2005 Jul-Aug;(345):e6.
  • Hristovski D, Kastrin A, Peterlin B, Rindflesch TC. Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation Lecture Notes in Bioinformatics. Springer
  • Demner-Fushman D, Antani SA, Simpson M, Rahman MM. Combining Text and Visual Features for Biomedical Information Retrieval and Ontologies. September 2010 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Demner-Fushman D, Kilicoglu H, Roberts K, Masterton K, Deardorff A. Consumer Health Question Answering to Automatically Support NLM Customer Services September2015 Technical Report to the LHNCBC Board of Scientific Counselors
  • Long LR, Antani SK, Thoma GR, Deserno TM. Content-based Image Retrieval For Advancing Medical Diagnostics, Treatment, and Education New Technologies for Advancing Healthcare and Clinical Practices. June 2011:1-17.
  • Collen MF, Sittig DF (Interviewer and Editor), Ash JS (Editor), Goodwin RM (Editor). Engineering Computerized Multiphasic Health Screening: 2005 Interview of Morris F. Collen, MD. Conversations with Medical Informatics Pioneers: An oral history project.
  • Ash J, Sittig D. Everything Electronic Medical Records: Systems, Standards and Studies Conversations with Medical Informatics Pioneers: An oral history project.
  • James E. McDonald, MD, Ron Fishman, MD (Editor), McDonald CJ (Editor). FOCUS Eye Care in Haiti and Nigeria from 1961-1996 E-book (1st edition 2010, 2nd edition 2014).
  • Detmer DE, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). Fostering Health Policy and the Biomedical Informatics Profession: 2006 Interview of Don Detmer. Conversations with Medical Informatics Pioneers: An oral history project.
  • Warner HR, Sittig DF (Interviewer and Editor), Ash JS (Editor), Goodwin RM (Editor). Founder of the HELP System and the Utah Medical Informatics Program: 2005 Interview of Homer R. Warner, Sr. Conversations with Medical Informatics Pioneers: An oral history project.
  • Barnett GO, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). From "Farm Boy" to Director of the Laboratory of Computer Science: 2004 Interview of G. Octo Barnett Conversations with Medical Informatics Pioneers: An oral history project.
  • Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). Introduction Conversations with Medical Informatics Pioneers: An oral history project.
  • Brown AC, Divita G, Lu C, McCreedy L, Nace D. Lexical Systems: A Report to the Board of Scientific Counselors September 2003 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Fung K. Medical Terminologies in Action Technical Report to the LHNCBC Board of Scientific Counselors September 2017
  • Demner-Fushman D, Mork JG. NLM Medical Text Indexer Technical Report to the LHNCBC Board of Scientific Counselors April 2016
  • Aronson AR, Mork JG, Lang FM, Rogers WJ, Neveol A. NLM Medical Text Indexer: A Tool for Automatic and Assisted Indexing April 2008 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Demner-Fushman D, Antani SK, Chachra S, Kushnir M, Gayen S. Open-i Imaging informatics, natural language processing and multi-modal information retrieval - research and development Technical Report to the LHNCBC Board of Scientific Counselors September 2016
  • Ben Abacha A, Agichtein E, Pinter Y, Demner-Fushman D. Overview of the Medical QA Task @ TREC 2017 LiveQA Track. TREC, Gaithersburg, MD, 2017.
  • Zarin DA. Scientific Issues in the Registration of Clinical Trials April 2007 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Tse T. Searching ClinicalTrials.gov. NLM Tech Bull. 2000 Sep-Oct;(316):e1.
  • Rindflesch TC, Fiszman M, Kilicoglu H, Rosemblat G, Shin D, Cairelli M, Chen G, Miller CM, Workman E. Semantic Knowledge Representation Project: Advanced Information Management for Biomedical Research September 2012 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Kayaalp M. Separation of Data, Interpreters and Likelihood March 2007 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Mork JG, Aronson AR. The Medical Text Indexer (MTI) system for indexing biomedical literature. book chapter submitted to monograph Indexing Specialities: Medicine. Edited by L. Pilar Wyman. Medford, NJ: Information Today, Inc., in association with the American Society of Indexers, Phoenix, AZ. 2010.
  • Aronson AR, Mork J, Lang FM, Rogers W, Jimeno-Yepes A, Sticco JC. The NLM Indexing Initiative: Current Status and Role in Improving Access to Biomedical Information April 2012 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Tse T, Zarin D, Williams R, Ide N. The role and importance of clinical trial registries and results databases In: Gallin JI, Ognibene FP, eds, Principles and Practice of Clinical Research. 3rd ed. Amsterdam: Academic Press; 2012: 171-81.
  • Matheson NW, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). The Woman Behind the NLM’s Integrated Advanced Information Management Systems (IAIMS) Initiative: 2005 Interview of Nina Matheson. Conversations with Medical Informatics Pioneers: An oral history project.
  • Tse T, Johnson SO, Ripple AM. Update: Expanded ClinicalTrials.gov search capabilities NLM Tech Bull. 2002 Jul-Aug;(327):e5.