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  • Lin J, Demner-Fushman D. "Bag of words" is not enough for strength of evidence classification AMIA Annu Symp Proc. 2005:1031.
  • Rahman MM, Antani SK, Thoma GR. A Classification-Driven Similarity Matching Framework For Retrieval of Biomedical Images. 11th ACM International Conference on Multimedia Information Retrieval (MIR 2010). 2010:147-154.
  • Thomas SM, Overhage JM, Warvel J, McDonald CJ. A comparison of a printed patient summary document with its electronic equivalent: early results. Proc AMIA Symp. 2001:701-5.
  • Vreeman DJ, McDonald CJ. A comparison of Intelligent Mapper and document similarity scores for mapping local radiology terms to LOINC. AMIA Annu Symp Proc. 2006:809-13.
  • Kroth PJ, Dexter PR, Overhage JM, Knipe C, Hui SL, Belsito A, McDonald CJ. A computerized decision support system improves the accuracy of temperature capture from nursing personnel at the bedside. AMIA Annu Symp Proc. 2006:444-8.
  • Rae A, Savery M, Mork JG, Demner-Fushman D. A High Recall Classifier for Selecting Articles for MEDLINE Indexing. AMIA Fall Symposium, 2019.
  • Biondich PG, Overhage JM, Dexter PR, Downs SM, Lemmon L, McDonald CJ. A modern optical character recognition system in a real world clinical setting: some accuracy and feasibility observations. Proc AMIA Symp. 2002:56-60.
  • Demner-Fushman D, Seckman C, Fisher C, Hauser SE, Clayton J, Thoma GR. A prototype system to support evidence-based practice AMIA Annu Symp Proc. 2008 Nov 6:151-5.
  • Nelson SJ, Brown SH, Erlbaum MS, Olson N, Powell T, Carlsen B, Carter J, Tuttle MS, Hole WT. A semantic normal form for clinical drugs in the UMLS: early experiences with the VANDF. Proc AMIA Symp. 2002:557-61.
  • Abhyankar S, Demner-Fushman D. A simple method to extract key maternal data from neonatal clinical notes. AMIA Annu Symp Proc. 2013 Nov 16;2013:2-9. eCollection 2013.
  • Thomas SM, Mamlin B, Schadow G, McDonald CJ. A successful technique for removing names in pathology reports using an augmented search and replace method. Proc AMIA Symp. 2002:777-81.
  • Hole WT, Carlsen BA, Tuttle MS, Srinivasan S, Lipow SS, Olson NE, Sheretz DD, Humphreys BL. Achieving "source transparency" in the UMLS Metathesaurus. Stud Health Technol Inform. 2004;107(Pt 1):371-5.
  • Fung K, Xue Z, Ameye F, Gutierrez AR, D'Have A. Achieving Logical Equivalence between SNOMED CT and ICD-10-PCS Surgical Procedures. AMIA Annu Symp Proc. 2018 Apr 16;2017:724-733. eCollection 2017.
  • Cimino JJ, Remennick L. Adapting a Clinical Data Repository to ICD-10-CM through the use of a Terminology Repository. AMIA Annu Symp Proc. 2014 Nov 14;2014:405-13. eCollection 2014.
  • Zhang S, Bodenreider O, Kantz N. Aligning Anatomical Ontologies: The Role of Complex Structural Rules IIAS-Transactions on Systems Research and Cybernetics - Proc InterSymp 2006;VI(2):27-32.
  • Winnenburg R, Rodriguez L, Callaghan F, Sorbello A, Szarfman A, Bodenreider O. Aligning Pharmacologic Classes Between MeSH and ATC. 4th International Conference on Biomedical Ontology · ICBO 2013
  • Kilicoglu H, Fiszman M, Roberts K, Demner-Fushman D. An Ensemble Method for Spelling Correction in Consumer Health Questions. AMIA Annu Symp Proc. 2015 Nov 5;2015:727-36. eCollection 2015.
  • Rahman MM, You D, Simpson M. An interactive image retrieval framework for biomedical articles based on visual region-of-interest (ROI) identification and classification [Abstract]. The 2nd IEEE Conference on Healthcare Informatics, Imaging, and Systems Biology Analyzing Big Data for Healthcare and Biomedical Sciences (HISB 2012). La Jolla, CA. September 2012.
  • Grannis SJ, Overhage JM, Hui S, McDonald CJ. Analysis of a probabilistic record linkage technique without human review. AMIA Annu Symp Proc. 2003:259-63.
  • Callaghan F, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald C. Analysis of data that has been extracted from free-text using natural language processing: a likelihood model for misclassification with an application to medical informatics. International Conference on Advances in Interdisciplinary Statistics and Combinatorics (AISC2012), Greensboro, NC, October 2012
  • Grannis SJ, Overhage JM, McDonald CJ. Analysis of identifier performance using a deterministic linkage algorithm. Proc AMIA Symp. 2002:305-9.
  • Bodenreider O, Rodriguez L. Analyzing U.S. prescription lists with RxNorm and the ATC/DDD Index. AMIA Annu Symp Proc. 2014 Nov 14;2014:297-306. eCollection 2014.
  • Kilicoglu H, Ben Abacha A, Mrabet Y, Roberts K, Rodriguez L, Shooshan SE, Demner-Fushman D. Annotating named entities in consumer health questions. LREC,23-28 May 2016, Portorož.
  • Roberts K, Masterton K, Kilicoglu H, Fiszman M, Demner-Fushman D. Annotating Question Decomposition on Complex Medical Questions. LREC 2014.
  • Roberts K, Masterton K, Fiszman M, Kilicoglu H, Demner-Fushman D. Annotating Question Types for Consumer Health Questions. LREC 2014, BioTxtM workshop.
  • Demner-Fushman D, Shooshan SE, Rodriguez L, Antani SK, Thoma GR. Annotation of Chest Radiology Reports for Indexing and Retrieval. Multimodal Retrieval in the Medical Domain 2015 (MRMD 2015), Vienna, Austria, March 29, 2015
  • Fung KW. API: RxTerms
  • Wang Y, Wei D, Xu J, Elhanan G, Perl Y, Halper M, Chen Y, Spackman KA, Hripcsak G. Auditing complex concepts in overlapping subsets of SNOMED. AMIA Annu Symp Proc. November 2008:273-7.
  • Mamlin BW, Heinze DT, McDonald CJ. Automated extraction and normalization of findings from cancer-related free-text radiology reports. AMIA Annu Symp Proc. 2003:420-4.
  • Vreeman DJ, McDonald CJ. Automated mapping of local radiology terms to LOINC. AMIA Annu Symp Proc. 2005:769-73.
  • You D, Antani SK, Demner-Fushman D, Rahman MM, Govindaraju V, Thoma GR. Automatic identification of ROI in figure images toward improving hybrid (text and image) biomedical document retrieval. Proceedings of SPIE Electronic Imaging Science and Technology, Document Retrieval and Recognition XVIII. San Francisco, CA. January 2011;7874:78740K.
  • Cheng B, Antani SK, Stanley J, Demner-Fushman D, Thoma GR. Automatic segmentation of subfigure image panels for multimodal biomedical document retrieval. Proceeding of: Document Recognition and Retrieval XVIII - DRR 2011, 18th Document Recognition and Retrieval Conference, part of the IS&T-SPIE Electronic Imaging Symposium, San Jose, CA, USA, January 24-29, 2011, Proceedings.
  • Demner-Fushman D, Karpinski J, Thoma GR. Automatically building a repository to support evidence-based practice. Proceedings of the 2nd Workshop on Building and evaluating resources for biomedical text mining (BioTxtM 2010), 7th Language Resources and Evaluation Conference (LREC 2010). Valetta, Malta. May 2010.
  • Rahman MM, Antani SK, Thoma GR. Bag of Keypoints-Based Biomedical Image Search With Affine Covariant Region Detection and Correlation-Enhanced Similarity Matching. 23rd IEEE International Symposium on Computer-Based Medical Systems (CBMS ) 2010. Perth, Australia. October 2010:261-6.
  • Kroth PJ, Belsito A, Overhage JM, McDonald CJ. Bedside vital signs capture for the non-ICU setting--an open source, PC-based solution. Proc AMIA Symp. 2001:344-8.
  • You D, Antani S, Demner-Fushman D, Rahman MM, Govindarju V, Thoma GR. Biomedical Article Retrieval Using Multimodal Features and Image Annotations In Region-based CBIR. Document Recognition and Retrieval XVII. Edited by Likforman-Sulem, Laurence; Agam, Gady. Proceedings of the SPIE. San Jose, CA. January 2010;7534:75340V-75340V-12.
  • Rahman MM, Antani SK, Thoma GR. Biomedical Image Retrieval In a Fuzzy Feature Space With Affine Region Detection and Vector Quantization of a Scale-Invariant Descriptor. 6th International Symposium on Visual Computing (ISVC) 2010. Las Vegas, NV. November 2010.
  • Ben Abacha A, Mrabet Y, Sharp M, Goodwin T, Shooshan S, Demner-Fushman D. Bridging the Gap Between Consumers’ Medication Questions and Trusted Answers. Stud Health Technol Inform. 2019 Aug 21;264:25-29. doi: 10.3233/SHTI190176.
  • Campbell JR, Xu J, Fung K. Can SNOMED CT fulfill the vision of a compositional terminology? Analyzing the use case for problem list. AMIA Annu Symp Proc. 2011;2011:181-8. Epub 2011 Oct 22.
  • Kury F, Baik SH, McDonald CJ. Cardioprotective Drugs and Incident Dementias in Medicare's Big Data. AMIA 2017.
  • Cimino JJ, Huser V. Characterization of the Context of Drug Concepts in Research Protocols: An Empiric Study to Guide Ontology Development. AMIA Annu Symp Proc. 2015 Nov 5;2015:441-7. eCollection 2015.
  • Xue Z, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Classification of CT Figures in Biomedical Articles Based on Body Segments. 2013 IEEE International Conference on Healthcare Informatics (ICHI), pp.264,268, 9-11 Sept. 2013. doi: 10.1109/ICHI.2013.17.
  • Xue Z, You D, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Classification of Visual Signs in Abdominal CT Image Figures in Biomedical Literature. Proc. SPIE. 9039. Medical Imaging 2014: PACS and Imaging Informatics: Next Generation and Innovations. 90390T.
  • Weiner M, Schadow G, Lindbergh D, Warvel J, Abernathy G, Perkins SM, Fyffe J, Dexter PR, McDonald CJ. Clinicians' and patients' experiences and satisfaction with unscheduled, nighttime, Internet-based video conferencing for assessing acute medical problems in a nursing facility. AMIA Annu Symp Proc. 2003:709-13.
  • Biondich PG, Downs SM, Carroll AE, Shiffman RN, McDonald CJ. Collaboration between the medical informatics community and guideline authors: fostering HIT standard development that matters. AMIA Annu Symp Proc. 2006:36-40.
  • Zhang X, Zou J, Le DX, Thoma GR. Combining Discriminative SVM models for the Improved Recognition of Investigator Names in Medical Articles. Proceedings of SPIE Volume 8658, Document Recognition and Retrieval XX, IS&T/SPIE Electronic Imaging 2013.
  • Fiszman M, Bray B, Shin D, Kilicoglu H, Bennett GC, Bodenreider O, Rindflesch TC. Combining relevance assignment with quality of the evidence to support guideline development. Stud Health Technol Inform. 2010;160(Pt 1):709-13.
  • Geller J, Morrey CP, Xu J, Halper M, Elhanan G, Perl Y, Hripcsak G. Comparing inconsistent relationship configurations indicating UMLS errors. AMIA Annu Symp Proc. 2009 Nov 14;2009:193-7.
  • Wei D, Wang Y, Perl Y, Xu J, Halper M, Spackman KA. Complexity measures to track the evolution of a SNOMED hierarchy. AMIA Annu Symp Proc. 2008 Nov 6:778-82.
  • Christensen JD, Hutchins GC, McDonald CJ. Computer automated detection of head orientation for prevention of wrong-side treatment errors. AMIA Annu Symp Proc. 2006:136-40.

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