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  • You D, Antani SK, Demner-Fushman D, Thoma GR. Does Figure-Text Improve Biomedical Article Retrieval? A Pilot Study. CBMS 2014. May 2014.
  • Chen S, Misra D, Thoma GR. Efficient Automatic OCR Word Validation Using Word Partial Format Derivation and Language Model Document Recognition and Retrieval XVII. Proceedings of the SPIE. San Jose, CA. January 2010;7534:75340O-75340O-8
  • Mao S, Kanungo T. Empirical Performance Evaluation of Page Segmentation Algorithms SPIE conference on Document Recognition and Retrieval. 2000 Jan.;:303-314.
  • Ide NC, Loane RF, Demner-Fushman D. Essie: A Concept-based Search Engine for Structured BiomedicalText J Am Med Inform Assoc. 2007 May-Jun;14(3):253-63. Epub 2007 Feb 28
  • Simpson M, Demner-Fushman D, Thoma GR. Evaluating the Importance of Image-related Text for Ad-hoc and Case-based Biomedical Article Retrieval. AMIA Annu Symp Proc. 2010 Nov 13;2010:752-6.
  • Zou J, Le DX, Thoma GR. Extracting a Sparsely-Located Named Entity from Online HTML Medical Articles Using Support Vector Machine Proc SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:6815OP(1-10)
  • Chachra S, Xue Z, Antani SK, Demner-Fushman D, Thoma GR. Extraction and Labeling High-resolution Images from PDF Documents. Proc. SPIE 9021, Document Recognition and Retrieval XXI, 90210Q (December 27, 2013). doi:10.1117/12.2042336.
  • Villegas M, Müller R, De Herrera A, Schaer R, Bromuri S, Gilbert A, Piras L, Wang J, Yan F, Ramisa A, Dellandrea E, Gaizauskas R, Mikolajczyk K, Puigcerver J, Toselli A, Sánchez J, Vidal E. General Overview of ImageCLEF at the CLEF 2016 Labs. CLEF Proceedings, Springer, 2016
  • Lin J, Karakos D, Demner-Fushman D, Khudanpur S. Generative Content Models for Structural Analysis of Medical Abstracts Proc 2006 BioNLP'06. June 2006, New York City, New York
  • Sabir TF, Hauser SE, Thoma GR. Historical Author Affiliations Assist Verification of Automatically Generated MEDLINE Citations AMIA Annu Symp Proc. 2006:1082
  • Kim IC, Le DX, Thoma GR. Hybrid approach combining contextual and statistical information for identifying and statistical information for identifying MEDLINE citation terms. Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150P(1-9)
  • Kim IC, Le DX, Thoma GR. Identification of "comment-on sentences" in online biomedical documents using support vector machines. Proc. SPIE conference on Document Recognition and Retrieval, 6500:65000O (1-8), San Jose, January 2007.
  • Kim J, Le DX, Thoma GR. Identification of Investigator Name Zones Using SVM Classifiers and Heuristic Rules. 12th international Conference on Document Analysis and Recognition (ICDAR). Washington D.C., August 2013.
  • Kim I, Le DX, Thoma GR. Identifying “comment-on” citation data in online biomedical articles using SVM-based text summarization technique. Proc. Int’l Conf. Artificial Intelligence (ICAI’12), vol. 1, pp. 431-437, Las Vegas, July 2012.
  • Apostolova E, You D, Xue Z, Antani SK, Demner-Fushman D, Thoma GR. Image Retrieval From Scientific Publications: Text and Image Content Processing To Separate Multipanel Figures. JASIST (Journal of the American Society for Information Science and Technology), 64(5):893–908, 2013.
  • Kim J, Le DX, Thoma GR. Inferring Grant Support Types From Online Biomedical Articles 22nd IEEE ISCBMS. Albuquerque, NM. August 2009
  • Rahman MM, You D, Simpson MS, Antani SK, Demner-Fushman D. Interactive Cross and Multimodal Biomedical Image Retrieval Based on Automatic Region-Of-Interest (ROI) Identification and Classification. International Journal of Multimedia Information Retrieval (MMIR) 2014 Sep;3(3):131-146.
  • Thoma GR, Ford G, Antani SK, Demner-Fushman D, Chung M, Simpson M. Interactive Publication: The document as a research tool. Web Semant. 2010 Jul 1;8(2-3):145-150.
  • Thoma GR, Ford G, Chung M, Vasudevan K, Antani S. Interactive Publications: Creation and Usage Proc IS and T/SPIE Electronic Imaging 2006: Digital Publishing. San Jose, CA. Jan 15-19, 2006.
  • Roberts K, Demner-Fushman D. Interactive use of online health resources: a comparison of consumer and professional questions. J Am Med Inform Assoc. 2016 Jul;23(4):802-11. doi: 10.1093/jamia/ocw024. Epub 2016 May 4.
  • Kilicoglu H, Fiszman M, Demner-Fushman D. Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis. Proceedings of BioNLP 2013. Pages 54-62.
  • Zhang X, Zou J, Le DX, Thoma GR. Investigator Name Recognition From Medical Journal Articles: A Comparative Study of SVM and Structural SVM International Workshop on Document Analysis Systems. June 2010:121-8
  • Vajda S. Label the many with a few: Semi-automatic medical image modality discovery in a large image collection. IEEE Symposium Series on Computational Intelligence, Orlando, FL, Dec 9-12, 2014
  • Kim J, Hong S, Thoma GR. Labeling Author Affiliations in Biomedical Articles Using Markov Model Classifiers. The 13th International Conference on Data Mining (DMIN2017), pp. 105-110, Las Vegas, USA, July 2017.
  • Zou J, Antani SK, Thoma GR. Localizing and Recognizing Labels for Multi-Panel Figures in Biomedical Journals. Proceedings of International Conference on Document Analysis and Recognition, November 13, 2017

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