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  • Lowekamp B, Yoo TS. Software: Insight Toolkit (ITK): Software for Image Segmentation and Registration.
  • Lussier YA, Bodenreider O. Clinical Ontologies for Discovery Applications In: Baker CJO, Cheung K-H, editors. Semantic Web: Revolutionizing knowledge discovery in the life sciences. New York: Springer; 2007. p. 101-119.
  • Mamlin BW, Overhage JM, Tierney WM, Dexter PR, McDonald CJ. Clinical decision support within the Regenstrief Medical Record System [Book//chapter] Health Informatics, Berner, Eta S. (Ed.) 2nd ed., 2007, 190-21.
  • Matheson NW, Ash JS (Interviewer and Editor), Sittig DF (Interviewer and Editor), Goodwin RM (Editor). The Woman Behind the NLM’s Integrated Advanced Information Management Systems (IAIMS) Initiative: 2005 Interview of Nina Matheson. Conversations with Medical Informatics Pioneers: An oral history project.
  • McCray AT, Bodenreider O. A Conceptual Framework for the Biomedical Domain The Semantics of Relationships: An Interdisciplinary Perspective. Boston: Kluwer Academic Publishers. 2002;:181-198.
  • McCray AT. Informatics Research, Development, and Training at the Lister Hill National Center for Biomedical Communications In: Yearbook of Medical Informatics 03. Stuttgart: Schattauer Verlag; 2003. pp 193-203.
  • McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 14, Use Case – Clinical Genomics Code Systems. in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).
  • McDonald CJ, Maglott D, Abhyankar S, Goodwin RM, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. US Realm, Chapter 5, Use Case – Clinical Genomics Results Reporting in HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), DTSU3. HL7 International (Ann Arbor).
  • McDonald CJ. Logical Observation Identifiers Names and Codes for In Vitro Diagnostic Test; Guidance for Industry and Food and Drug Administration Staff. Silver Spring, Md: Center for Devices and Radiological Health, FDA, 2018.
  • McDonald CJ, Maglott D, Abhyankar S, Goodwin R, Kanduru A, Lu S, Lynch P, Vreeman D, Wang Y, Wood G. HL7 Version 2.5.1 Implementation Guide: Lab Results Interface (LRI), Release 1, STU Release 4. US Realm, Chapter 5, Clinical Genomics Results Reporting. Published for May 2017 Ballot.
  • McDonald CJ, Tang PC, Hripcsak G. Electronic Health Record Systems. . In: Shortliffe EH, Cimino JJ, editors. Biomedical Informatics: Computer Applications in Healthcare and Biomedicine 4th ED [Internet]. London: Springer London; 2014. p. 391–421. Available from: http://link.springer.com/10.1007/978-1-4471-4474-8.
  • McDonald CJ, Vreeman DJ, Abhyankar S. Comment on "time to integrate clinical and research informatics" [Letter]. Sci Transl Med. 2013 Apr 3;5(179):179le1. doi: 10.1126/scitranslmed.3005700.
  • McDonald CJ, Tierney WM. The effect of electronic health records on test ordering [Letter}. Health Aff (Millwood). 2012 Jun;31(6):1365; author reply 1366. doi: 10.1377/hlthaff.2012.0471.
  • McDonald CJ, McDonald MH. Electronic medical records and preserving primary care physicians' time: comment on "electronic health record-based messages to primary care providers" [Letter]. Arch Intern Med. 2012 Feb 13;172(3):285-7. doi: 10.1001/archinternmed.2011.1678.
  • McDonald CJ, Hill G. IUPAC Silver Book- Compendium of Terminology and Nomenclature of Properties in Clinical Laboratory Sciences - Chapter 8 - Kinds-of-Quantity of Dimension One. SI Unit 1. Royal Society of Chemistry; 2009. doi:10.1039/978178262245.1-00075.
  • McDonald CJ, Overhage JM, Mamlin BW, Dexter PD, Tierney WM. Physicians, information technology, and health care systems: a journey, not a destination [Letter]. J Am Med Inform Assoc. 2004 Mar-Apr;11(2):121-4.
  • McDonald CJ. Is the placebo powerless? [Letter] N Engl J Med. 2001 Oct 25;345(17):1276-7; author reply 1278-9.
  • McDonald CJ, Weiner M, Hui SL. How many deaths are due to medical errors? [Letter]. JAMA. 2000;284(17):2187. doi:10.1001/jama.284.17.2184
  • McDonald CJ. Perspective: Need for Standards In Health Information Health Aff (Millwood). 1998 Nov-Dec;17(6):44-6.
  • Mork JG, Aronson AR. The Medical Text Indexer (MTI) system for indexing biomedical literature. book chapter submitted to monograph Indexing Specialities: Medicine. Edited by L. Pilar Wyman. Medford, NJ: Information Today, Inc., in association with the American Society of Indexers, Phoenix, AZ. 2010.
  • Neve L, Long LR, Antani SK. Software: Boundary Marking Tool 2 (BMT2)
  • Névéol A, Mork JG, Aronson AR. Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'. Bioinformatics. 2009 Oct 15;25(20):2770-1; author reply 2772. doi: 10.1093/bioinformatics/btp483. Epub 2009 Aug 11.
  • O'Brien JF, Yoo TS, editors. Modern Techniques for Implicit Modeling. Tutorial Notes for ACM SIGGRAPH 2005: the 32nd International Conference on Computer Graphics and Interactive Techniques; 2005 Jul 31-Aug 4; Los Angeles. 300 pages.
  • Peters TM, Linte CA, Yaniv Z, Williams J. Mixed and Augmented Reality in Medicine. CRC Press.
  • Rajaraman S, Candemir S, Xue Z, Alderson P, Thoma G, Antani SK. A Novel Stacked Model Ensemble for Improved TB Detection in Chest Radiographs. In Santosh KC et al. (Eds.). Medical Imaging: Artificial Intelligence, Image Recognition, and Machine Learning Techniques. (pp. 1-26). New York, NY: CRC Press, Taylor & Francis Group.

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