Kho A, Dexter P, Warvel J, Commiskey M, Wilson S, McDonald CJ.Computerized reminders to improve isolation rates of patients with drug-resistant infections: design and preliminary results. AMIA Annu Symp Proc. 2005:390-4.
Laflamme MR, Dexter PR, Graham MF, Hui SL, McDonald CJ.Efficiency, comprehensiveness and cost-effectiveness when comparing dictation and electronic templates for operative reports. AMIA Annu Symp Proc. 2005:425-9.
McDonald CJ, Overhage JM, Barnes M, Schadow G, Blevins L, Dexter PR, Mamlin BW.The Indiana network for patient care: a working local health information infrastructure. An example of a working infrastructure collaboration that links data from five health systems and hundreds of millions of entries. Health Aff (Millwood). 2005 Sep-Oct;24(5):1214-20.
Weiner M, Stump TE, Callahan CM, Lweis JN, McDonald CJ.Pursuing integration of performance measures into electronic medical records: beta-adrenergic receptor antagonist medications. Qual Saf Health Care. 2005 Apr;14(2):99-106.
Dexter PR, Perkins SM, Maharry KS, Jones K, McDonald CJ.Inpatient computer-based standing orders vs physician reminders to increase influenza and pneumococcal vaccination rates: a randomized trial. JAMA. 2004 Nov 17;292(19):2366-71.
Zafar A, Mamlin B, Perkins S, Belsito AM, Overhage JM, McDonald CJ.A simple error classification system for understanding sources of error in automatic speech recognition and human transcription. Int J Med Inform. 2004 Sep;73(9-10):719-30.
Zhang S, Bodenreider O.Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE, editors. Pacific Symposium on Biocomputing 2004: World Scientific. 2004;: 250-261.
Zhang S, Bodenreider O.Knowledge Augmentation for Aligning Ontologies: An Evaluation in the Biomedical Domain Proceedings of the Semantic Integration Workshop at the Second International Semantic Web Conference. 2003: 109-114.
McDonald CJ, Overhage JM, Mamlin BW, Dexter PD, Tierney WM.Physicians, information technology, and health care systems: a journey, not a destination [Letter]. J Am Med Inform Assoc. 2004 Mar-Apr;11(2):121-4.
Murray MD, Harris LE, Overhage JM, Zhou XH, Eckert GJ, Smith FE, Buchanan NN, Wolinsky FD, McDonald CJ, Tierney WM.Failure of computerized treatment suggestions to improve health outcomes of outpatients with uncomplicated hypertension: results of a randomized controlled trial. Pharmacotherapy. 2004 Mar;24(3):324-37.
Azuaje FJ, Bodenreider O, Wang H, Dopazo J.Gene Ontology-Driven Similarity for Gene Expression Correlation Analysis Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:47.
Bodenreider O, Azuaje F.Incorporating Ontology-Driven Similarity Knowledge Into Functional Genomics: An Exploratory Study Proceedings of the 2004 IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE-2004) 2004:317-324.
Bodenreider O, Smith B, Burugn A.The Ontology-Epistemology Divide: A Case Study in Medical Terminology Proceedings of the Third International Conference on Formal Ontology in Information Systems (FOIS2004): IOS Press; 2004. p. 185-195.
Wang H, Azuaje F, Bodenreider O, Dopazo J.Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB'2004) 2004:25-31.