You are here

  • Pearson G, Moon CW. Bridging Two Biomedical Journal Databases with XML - A Case Study. Proc. 14th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2001 Jul;:309-14.
  • Lee DJ, Antani S, Chang Y, Long LR, Christensen P, Jeronimo J. CBIR of Spine X-ray Images On Inter-vertebral Disc Space and Shape Profiles Using Feature Ranking and Voting Consensus. Data & Knowledge Engineering, Special Issue on Knowledge Discovery in Medicine. 2009.
  • Xue Z, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Classification of CT Figures in Biomedical Articles Based on Body Segments. 2013 IEEE International Conference on Healthcare Informatics (ICHI), pp.264,268, 9-11 Sept. 2013. doi: 10.1109/ICHI.2013.17.
  • Xue Z, You D, Antani SK, Long LR, Demner-Fushman D, Thoma GR. Classification of Visual Signs in Abdominal CT Image Figures in Biomedical Literature. Proc. SPIE. 9039. Medical Imaging 2014: PACS and Imaging Informatics: Next Generation and Innovations. 90390T.
  • Lu C, Payne A, Demner-Fushman D. Classification Types: A New Feature in the SPECIALIST Lexicon. AMIA Fall Symposium, 2019.
  • Demner-Fushman D. Clinical, Consumer Health, and Visual Question Answering. Springer Nature Switzerland AG 2019. J. A. Lossio-Ventura et al. (Eds.): SIMBig 2018, CCIS 898, pp. 1–6, 2019.
  • Guo P, Stanley RJ, Cole JG, Hagerty JR, Stoecker WV. Color Feature-based Pillbox Image Color Recognition. Published 2017 in VISIGRAPP DOI:10.5220/0006136001880194.
  • Zou J, Le DX, Thoma GR. Combining DOM Tree and Geometric Layout Analysis for Online Medical Journal Article Segmentation Proc JCDL, June 2006, Chapel Hill, NC; 119-28
  • Kim J, Le DX, Thoma GR. Combining SVM Classifiers to Identify Investigator Name Zones in Biomedical Articles. IS&T/SPIE’s 22nd Annual Symposium on Electronic Imaging. San Francisco, CA, January 2012; 8297.
  • Demner-Fushman D, Antani SA, Simpson M, Rahman MM. Combining Text and Visual Features for Biomedical Information Retrieval and Ontologies. September 2010 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Demner-Fushman D, Kilicoglu H, Roberts K, Masterton K, Deardorff A. Consumer Health Question Answering to Automatically Support NLM Customer Services September2015 Technical Report to the LHNCBC Board of Scientific Counselors
  • Long LR, Antani SK, Thoma GR, Deserno TM. Content-based Image Retrieval For Advancing Medical Diagnostics, Treatment, and Education New Technologies for Advancing Healthcare and Clinical Practices. June 2011:1-17.
  • Deserno TM, Antani S, Long LR. Content-based image retrieval for scientific literature access. Methods Inf Med. 2009;48(4):371-80. doi: 10.3414/ME0561. Epub 2009 Jul 20.
  • Kilicoglu H, Demner-Fushman D. Coreference Resolution for Structured Drug Product Labels Proceedings of BioNLP 2014. pp. 44-53.
  • Hauser SE, Schlaifer J, Sabir TF, Demner-Fushman D, Thoma GR. Correcting OCR Text by Association with Historic Datasets Proc. SPIE Electronic Imaging. 2003 Jan;5010: 84-93.
  • Roberts K, Kilicoglu H, Fiszman M, Demner-Fushman D. Decomposing consumer health questions. BioNLP 2014.
  • Demner-Fushman D, Antani SK, Simpson M, Thoma GR. Design and Development of a Multimodal Biomedical Information Retrieval System JCSE. June 2012;6(2):168-177.
  • Thoma GR, Mao S, Misra D, Rees J. Design of a Digital Library for Early 20th Century Medico-legal Documents Proc ECDL 2006. Eds: Gonzalo J et al. Berlin: Springer-Verlag; LNCS 4172: 147-57
  • Mao S, Misra D, Seamans J, Thoma GR. Design Strategies for a Prototype Electronic Preservation System for Biomedical Documents IS&T Archiving 2005 Conference, April 2005; 48-53.
  • You D, Antani SK, Demner-Fushman D, Govindaraju V, Thoma GR. Detecting Figure-Panel Labels In Medical Journal Articles Using MRF. Proceedings of 11th International Conference on Document Analysis and Recognition (ICDAR 2011). Beijing, China. September 2011:967-971.
  • Misra D, Hall RH, Payne SM, Thoma GR. Digital preservation and knowledge discovery based on documents from an international health science program. Proc. 12th ACM/IEEE-CS JCDL, pg 23-26 (2012). doi: 10.1145/2232817.2232823.
  • Mao S, Rosenfeld A, Kanungo T. Document Structure Analysis Algorithms: A Literature Survey Proc. SPIE Electronic Imaging. 2003 Jan;5010:197-207.
  • You D, Antani SK, Demner-Fushman D, Thoma GR. Does Figure-Text Improve Biomedical Article Retrieval? A Pilot Study. CBMS 2014. May 2014.
  • Chen S, Misra D, Thoma GR. Efficient Automatic OCR Word Validation Using Word Partial Format Derivation and Language Model Document Recognition and Retrieval XVII. Proceedings of the SPIE. San Jose, CA. January 2010;7534:75340O-75340O-8
  • Mao S, Kanungo T. Empirical Performance Evaluation Methodology and its Application to Page Segmentation Algorithms IEEE Transactions on Pattern Analysis and Machine Intelligence. 2001 Mar;23(3): 242-256.
  • Mao S, Kanungo T. Empirical Performance Evaluation of Page Segmentation Algorithms SPIE conference on Document Recognition and Retrieval. 2000 Jan.;:303-314.
  • Ide NC, Loane RF, Demner-Fushman D. Essie: A Concept-based Search Engine for Structured BiomedicalText J Am Med Inform Assoc. 2007 May-Jun;14(3):253-63. Epub 2007 Feb 28
  • Simpson M, Demner-Fushman D, Thoma GR. Evaluating the Importance of Image-related Text for Ad-hoc and Case-based Biomedical Article Retrieval. AMIA Annu Symp Proc. 2010 Nov 13;2010:752-6.
  • Zou J, Le DX, Thoma GR. Extracting a Sparsely-Located Named Entity from Online HTML Medical Articles Using Support Vector Machine Proc SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:6815OP(1-10)
  • Chachra S, Xue Z, Antani SK, Demner-Fushman D, Thoma GR. Extraction and Labeling High-resolution Images from PDF Documents. Proc. SPIE 9021, Document Recognition and Retrieval XXI, 90210Q (December 27, 2013). doi:10.1117/12.2042336.
  • Zarin D. Factual Errors about ClinicalTrials.gov and other federal mandates in special report by Shuster [Letter]. Clin Transl Sci. 2012 Apr;5(2):217; author reply 217. doi: 10.1111/j.1752-8062.2012.00410.x.
  • Villegas M, Müller R, De Herrera A, Schaer R, Bromuri S, Gilbert A, Piras L, Wang J, Yan F, Ramisa A, Dellandrea E, Gaizauskas R, Mikolajczyk K, Puigcerver J, Toselli A, Sánchez J, Vidal E. General Overview of ImageCLEF at the CLEF 2016 Labs. CLEF Proceedings, Springer, 2016
  • Mao S, Kim J, Le DX, Thoma GR. Generating Robust Features for Style-Independent Labeling of Bibliographic Fields in Medical Journal Articles Proc. 7th World Multiconference on Systemics, Cybernetics and Informatics.2003 July;III:53-6.
  • Lin J, Karakos D, Demner-Fushman D, Khudanpur S. Generative Content Models for Structural Analysis of Medical Abstracts Proc 2006 BioNLP'06. June 2006, New York City, New York
  • Le DX, Straughan SR, Thoma GR. Greek Alphabet Recognition Technique for Biomedical Documents Proc. 6th World Multiconference on Systemics, Cybernetics and Informatics, eds: Callaos N, et al. 2002 July;III: 86-91.
  • Ford G, Thoma GR. Ground Truth Data for Document Image Analysis Proceedings of 2003 Symposium on Document Image Understanding and Technology. 2003 April 9-11;: 199-205.
  • Sabir TF, Hauser SE, Thoma GR. Historical Author Affiliations Assist Verification of Automatically Generated MEDLINE Citations AMIA Annu Symp Proc. 2006:1082
  • Kim IC, Le DX, Thoma GR. Hybrid approach combining contextual and statistical information for identifying and statistical information for identifying MEDLINE citation terms. Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150P(1-9)
  • Kim IC, Le DX, Thoma GR. Identification of "comment-on sentences" in online biomedical documents using support vector machines. Proc. SPIE conference on Document Recognition and Retrieval, 6500:65000O (1-8), San Jose, January 2007.
  • Kim J, Le DX, Thoma GR. Identification of Investigator Name Zones Using SVM Classifiers and Heuristic Rules. 12th international Conference on Document Analysis and Recognition (ICDAR). Washington D.C., August 2013.
  • Kim I, Le DX, Thoma GR. Identifying “comment-on” citation data in online biomedical articles using SVM-based text summarization technique. Proc. Int’l Conf. Artificial Intelligence (ICAI’12), vol. 1, pp. 431-437, Las Vegas, July 2012.
  • Apostolova E, You D, Xue Z, Antani SK, Demner-Fushman D, Thoma GR. Image Retrieval From Scientific Publications: Text and Image Content Processing To Separate Multipanel Figures. JASIST (Journal of the American Society for Information Science and Technology), 64(5):893–908, 2013.
  • Kim J, Le DX, Thoma GR. Inferring Grant Support Types From Online Biomedical Articles 22nd IEEE ISCBMS. Albuquerque, NM. August 2009
  • Rahman MM, You D, Simpson MS, Antani SK, Demner-Fushman D. Interactive Cross and Multimodal Biomedical Image Retrieval Based on Automatic Region-Of-Interest (ROI) Identification and Classification. International Journal of Multimedia Information Retrieval (MMIR) 2014 Sep;3(3):131-146.
  • Thoma GR, Ford G, Antani SK, Demner-Fushman D, Chung M, Simpson M. Interactive Publication: The document as a research tool. Web Semant. 2010 Jul 1;8(2-3):145-150.
  • Thoma GR, Antani S, Ford GL, Chung M, Vasudevan K. Interactive Publications Research: A Report to the Board of Scientific Counselors September 2005 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Thoma GR, Ford G, Chung M, Vasudevan K, Antani S. Interactive Publications: Creation and Usage Proc IS and T/SPIE Electronic Imaging 2006: Digital Publishing. San Jose, CA. Jan 15-19, 2006.
  • Roberts K, Demner-Fushman D. Interactive use of online health resources: a comparison of consumer and professional questions. J Am Med Inform Assoc. 2016 Jul;23(4):802-11. doi: 10.1093/jamia/ocw024. Epub 2016 May 4.
  • Kilicoglu H, Fiszman M, Demner-Fushman D. Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis. Proceedings of BioNLP 2013. Pages 54-62.
  • Zhang X, Zou J, Le DX, Thoma GR. Investigator Name Recognition From Medical Journal Articles: A Comparative Study of SVM and Structural SVM International Workshop on Document Analysis Systems. June 2010:121-8

Pages