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  • Vizenor LT, Bodenreider O, McCray AT. Auditing associative relations across two knowledge sources. J Biomed Inform. 2009 Jun;42(3):426-39. doi: 10.1016/j.jbi.2009.01.004.
  • Wang Y, Wei D, Xu J, Elhanan G, Perl Y, Halper M, Chen Y, Spackman KA, Hripcsak G. Auditing complex concepts in overlapping subsets of SNOMED. AMIA Annu Symp Proc. November 2008:273-7.
  • Wang Y, Halper M, Wei D, Gu H, Perl Y, Xu J, Elhanan G, Chen Y, Spackman KA, Case JT, Hripcsak G. Auditing complex concepts of SNOMED using a refined hierarchical abstraction network. J Biomed Inform. 2012 Feb;45(1):1-14. doi: 10.1016/j.jbi.2011.08.016. Epub 2011 Sep 1.
  • Lin MC, Vreeman DJ, McDonald CJ, Huff SM. Auditing consistency and usefulness of LOINC use among three large institutions - using version spaces for grouping LOINC codes. J Biomed Inform. 2012 Aug;45(4):658-66. doi: 10.1016/j.jbi.2012.01.008. Epub 2012 Jan 28.
  • Cui L, Bodenreider O, Shi J, Zhang GQ. Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs. Biomed Inform. 2018 Feb;78:177-184. doi: 10.1016/j.jbi.2017.12.010. Epub 2017 Dec 20.
  • Mougin F, Bodenreider O. Auditing the NCI Thesaurus with Semantic Web Technologies AMIA Annu Symp Proc. 2008 Nov 6:500-4
  • Mamlin BW, Heinze DT, McDonald CJ. Automated extraction and normalization of findings from cancer-related free-text radiology reports. AMIA Annu Symp Proc. 2003:420-4.
  • Vreeman DJ, McDonald CJ. Automated mapping of local radiology terms to LOINC. AMIA Annu Symp Proc. 2005:769-73.
  • Bodenreider O, Mougin F, Burgun A. Automatic Determination of Anti-coagulation Status with NDF-RT Proceedings of the 13th ISMB'2010 SIG meeting Bio-ontologies 2010:140-143
  • Mougin F, Burgun A, Bodenreider O, Chabalier J, Loreal O, Le Beux P. Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System Proc DILS 2008. Berlin Heidelberg New York: Springer; 2008. p. 61-76
  • Demner-Fushman D, Karpinski J, Thoma GR. Automatically building a repository to support evidence-based practice. Proceedings of the 2nd Workshop on Building and evaluating resources for biomedical text mining (BioTxtM 2010), 7th Language Resources and Evaluation Conference (LREC 2010). Valetta, Malta. May 2010.
  • Mahmoud MA, Al-Khafaji JT, Al-Shorbaji N, Sara K, Al-Ubaydli M, Ghazzaoui R, Liu F, Fontelo P. BabelMeSH and PICO Linguist in Arabic. AMIA Annu Symp Proc; 2008 Nov 8-12; Washington DC. p. 944.
  • Liu F, Fontelo P, Ackerman MJ. BabelMeSH: Development of a Cross-Language Tool for MEDLINE/PubMed. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2006 Nov 11-15; Washington DC. p.1012.
  • Kroth PJ, Belsito A, Overhage JM, McDonald CJ. Bedside vital signs capture for the non-ICU setting--an open source, PC-based solution. Proc AMIA Symp. 2001:344-8.
  • Fung K, Scichilone R, Giannangelo K. Benefits and Use Cases of a SNOMED CT to ICD-10 Map. AMIA Annu Symp Proc 2010: 1049.
  • Jing X, Kay S, Hardiker NR. Bio-health information: a preliminary review of on-line cystic fibrosis resources. Stud Health Technol Inform. 2005;116:21-6.
  • Bodenreider O, Stevens R. Bio-ontologies: Current Trends and Future Directions Brief Bioinform. 2006 Sep;7(3):256-74. Epub 2006 Aug 9
  • Kilicoglu H, Demner-Fushman D. Bio-SCoRes: A Smorgasbord Architecture for Coreference Resolution in Biomedical Text. PLoS One. 2016 Mar 2;11(3):e0148538. doi: 10.1371/journal.pone.0148538. eCollection 2016.
  • Bodenreider O, Mitchell JA, McCray AT. Biomedical Ontologies Pacific Symposium on Biocomputing: World Scientific. 2003;:562-564.
  • Bodenreider O. Biomedical Ontologies in Action: Role in Knowledge Management, Data Integration and Decision Support. Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med, 2008. 47(Suppl 1): p. 67-79.
  • Sylim P, Liu F, Marcelo A, Fontelo P. Blockchain Technology for Detecting Falsified and Substandard Drugs in Distribution: Pharmaceutical Supply Chain Intervention. JMIR Res Protoc. 2018 Sep 13;7(9):e10163. doi: 10.2196/10163.
  • Boyce RD, Ryan PB, Noren GN, Schuemie MJ, Reich C, Duke J, Tatonetti NP, Trifiro G, Harpaz R, Overhage JM, Hartzema AG, Kayter M, Voss EA, Lambert CG, Huser V, Dumontier M. Bridging islands of information to establish an integrated knowledge base of drugs and health outcomes of interest. Drug Saf. 2014 Aug;37(8):557-67. doi: 10.1007/s40264-014-0189-0.
  • Fontelo P, Liu F. Bringing the Medical Library Where Needed - At the Point of Care. Technical Report to the LHNCBC Board of Scientific Counselors; 2008 Sep. 61 pages.
  • Bodenreider O, Peters L, Nguyen T. Browser and application programming interfaces for drug information sources. AMIA Annu Symp Proc, 2011: p. 2129.
  • Fontelo P. Can journal abstracts alone be used for clinical decision making [Letter]? BMJ. 2011 Nov 2.
  • Campbell JR, Xu J, Fung K. Can SNOMED CT fulfill the vision of a compositional terminology? Analyzing the use case for problem list. AMIA Annu Symp Proc. 2011;2011:181-8. Epub 2011 Oct 22.
  • McDonald CJ, Overhage JM, Dexter PR, Blevins L, Meeks-Johnson J, Suico JG, Tucker MC, Schadow G. Canopy computing: using the Web in clinical practice. JAMA. 1998 Oct 21;280(15):1325-9.
  • Kury F, Baik SH, McDonald CJ. Cardioprotective Drugs and Incident Dementias in Medicare's Big Data. AMIA 2017.
  • Hersh WR, Weiner MG, Embi PJ, Logan JR, Payne PR, Bernstam EV, Lehmann HP, Hripcsak G, Hartzog TH, Cimino J, Saltz JH. Caveats for the use of operational electronic health record data in comparative effectiveness research. Med Care. 2013 Aug;51(8 Suppl 3):S30-7. doi: 10.1097/MLR.0b013e31829b1dbd.
  • Sneiderman CA, Ackerman MJ. Cellular Radio Telecommunication for Health Care: Benefits and Risks. J Am Med Inform Assoc. 2004 Nov-Dec;11(6):479-81. Epub 2004 Aug 6.
  • Hruby GW, Boland MR, Cimino J, Gao J, Wilcox AB, Hirschberg J, Weng C. Characterization of the biomedical query mediation process. AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:89-93. eCollection 2013.
  • Cimino JJ, Huser V. Characterization of the Context of Drug Concepts in Research Protocols: An Empiric Study to Guide Ontology Development. AMIA Annu Symp Proc. 2015 Nov 5;2015:441-7. eCollection 2015.
  • Bodenreider O, Burgun A. Characterizing the Definitions of Anatomical Concepts in WordNet and Specialized Sources Proc. of the First Global WordNet Conference. 2002;:223-230.
  • Hripcsak G, Ryan PB, Duke JD, Shah NH, Park RW, Huser V, Suchard MA, Schuemie MJ, DeFalco FJ, Perotte A, Banda JM, Reich CG, Schilling LM, Matheny ME, Meeker D, Pratt N, Madigan D. Characterizing treatment pathways at scale using the OHDSI network. Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):7329-36. doi: 10.1073/pnas.1510502113. Epub 2016 Jun 6.
  • Bodenreider O. Circular hierarchical relationships in the UMLS: etiology, diagnosis, treatment, complications and prevention. Proc AMIA Symp. 2001:57-61.
  • Bergun A, Bodenreider O, Mougin F. Classifying diseases with respect to anatomy: a study in SNOMED CT AMIA Annu Symp Proc. 2005:91-5
  • McDonald CJ, Abhyankar S. Clinical decision support and rich clinical repositories: a symbiotic relationship: comment on "Electronic health records and clinical decision support systems". Arch Intern Med. 2011 May 23;171(10):903-5. doi: 10.1001/archinternmed.2010.518. Epub 2011 Jan 24.
  • Overhage J, Tierney W, McDonald CJ. Clinical Decision Support in Ambulatory Care Tools, Trials, and Tribulations. J Health Manag 1999 vol: 13 (2) pp: 67-79.
  • Kawamoto K, Jacobs J, Welch BM, Huser V, Paterno MD, Del Fiol G, Shields D, Strasberg HR, Huag PJ, Liu Z, Jenders RA, Rowed DW, Chertcoff D, Fehre K, Adlassnig KP, Curtis C. Clinical information system services and capabilities desired for scalable, standards-based, service-oriented decision support: consensus assessment of the Health Level 7 clinical decision support Work Group. AMIA Annu Symp Proc. 2012;2012:446-55. Epub 2012 Nov 3.
  • Pontet F, Magdal Petersen U, Fuentes-Arderiu X, Nordin G, Bruunshuus I, Ihalainen J, Karlsson D, Forsum U, Dybkaer R, Schadow G, Kuelpmann W, Ferard G, Kang D, McDonald C, Hill G. Clinical laboratory sciences data transmission: the NPU coding system. Stud Health Technol Inform. 2009;150:265-9.
  • Lussier YA, Bodenreider O. Clinical Ontologies for Discovery Applications In: Baker CJO, Cheung K-H, editors. Semantic Web: Revolutionizing knowledge discovery in the life sciences. New York: Springer; 2007. p. 101-119.
  • Liu F, Fontelo P, Gavino A. ClinicalTrials and DailyMed Links from Translational Science Search [Poster]. AMIA Annu Symp Proc [Proceedings of the American Medical Informatics Association Annual Symposium]; 2012 Nov 3-7; Chicago. p. 1841.
  • Weiner M, Schadow G, Lindbergh D, Warvel J, Abernathy G, Perkins SM, Fyffe J, Dexter PR, McDonald CJ. Clinicians' and patients' experiences and satisfaction with unscheduled, nighttime, Internet-based video conferencing for assessing acute medical problems in a nursing facility. AMIA Annu Symp Proc. 2003:709-13.
  • Zhu X, Cimino JJ. Clinicians' evaluation of computer-assisted medication summarization of electronic medical records. Comput Biol Med. 2015 Apr;59:221-31. doi: 10.1016/j.compbiomed.2013.12.006. Epub 2013 Dec 19.
  • Marino-Ramirez L, Bodenreider O, Kantz N, Jordan IK. Co-evolutionary Rates of Functionally Related Yeast Genes Evolutionary Bioinformatics Online 2006;2:295-300.
  • Biondich PG, Downs SM, Carroll AE, Shiffman RN, McDonald CJ. Collaboration between the medical informatics community and guideline authors: fostering HIT standard development that matters. AMIA Annu Symp Proc. 2006:36-40.
  • Zhang X, Zou J, Le DX, Thoma GR. Combining Discriminative SVM models for the Improved Recognition of Investigator Names in Medical Articles. Proceedings of SPIE Volume 8658, Document Recognition and Retrieval XX, IS&T/SPIE Electronic Imaging 2013.
  • Fiszman M, Bray B, Shin D, Kilicoglu H, Bennett GC, Bodenreider O, Rindflesch TC. Combining relevance assignment with quality of the evidence to support guideline development. Stud Health Technol Inform. 2010;160(Pt 1):709-13.
  • Bodenreider O. Comment les Usagers Accedent a l'Information Medicale Aux USA: l'Exemple de MEDLINEplus [How Consumers Access Health Information in the USA: The MEDLINEplus Example] Innovation et Technologie en Biologie et Medecine. 2000;21(5):286-90.
  • McDonald CJ, Vreeman DJ, Abhyankar S. Comment on "time to integrate clinical and research informatics" [Letter]. Sci Transl Med. 2013 Apr 3;5(179):179le1. doi: 10.1126/scitranslmed.3005700.

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