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  • Thoma GR, Mao S, Misra D, Rees J. Design of a Digital Library for Early 20th Century Medico-legal Documents Proc ECDL 2006. Eds: Gonzalo J et al. Berlin: Springer-Verlag; LNCS 4172: 147-57
  • Mao S, Misra D, Seamans J, Thoma GR. Design Strategies for a Prototype Electronic Preservation System for Biomedical Documents IS&T Archiving 2005 Conference, April 2005; 48-53.
  • Madani S, Henderson J, Fung K. Development of an oncology subset of SNOMED CT based on patient notes. AMIA Annu Symp Proc 2016: 91-92.
  • Misra D, Hall RH, Payne SM, Thoma GR. Digital preservation and knowledge discovery based on documents from an international health science program. Proc. 12th ACM/IEEE-CS JCDL, pg 23-26 (2012). doi: 10.1145/2232817.2232823.
  • Nguyen V, Bodenreider O, Sheth AP. Don't Like RDF Reification? Making Statements about Statements Using Singleton Property. Proc Int World Wide Web Conf. 2014 Apr 11;2014:759-770.
  • Bodenreider O, Winnenburg R. Drug Terminology and Ontology Integration -- Dissemination, Quality Assurance and Applications. September 2014 Technical Report to the LHNCBC Board of Scientific Counselors.
  • Laflamme MR, Dexter PR, Graham MF, Hui SL, McDonald CJ. Efficiency, comprehensiveness and cost-effectiveness when comparing dictation and electronic templates for operative reports. AMIA Annu Symp Proc. 2005:425-9.
  • Chen S, Misra D, Thoma GR. Efficient Automatic OCR Word Validation Using Word Partial Format Derivation and Language Model Document Recognition and Retrieval XVII. Proceedings of the SPIE. San Jose, CA. January 2010;7534:75340O-75340O-8
  • Ackerman MJ. Electronics and Health Care Revisited: Thirty-Eight Years Later. Proc IEEE. 2000;88(5):706-7. DOI: 10.1109/5.849172.
  • Bahr NJ, Nelson SD, Winnenburg R, Bodenreider O. Eliciting the Intension of Drug Value Sets - Principles and Quality Assurance Applications. Stud Health Technol Inform. 2017;245:843-847.
  • Mao S, Kanungo T. Empirical Performance Evaluation of Page Segmentation Algorithms SPIE conference on Document Recognition and Retrieval. 2000 Jan.;:303-314.
  • Abhyankar S, Schluter P, Bennett K, Vreeman D, McDonald CJ. Enabling Interoperability between Healthcare Devices and EHR Systems. In 2017 AMIA Symposium. Wasington DC: IEEE.
  • Vizenor L, Bodenreider O, Peters L, McCray AT. Enhancing Biomedical Ontologies through Alignment of Semantic Relationships: Exploratory Approaches AMIA Annu Symp Proc. 2006:804-8.
  • Winnenburg R, Bodenreider O. Evaluating the consistency of inferred drug-class membership relations in NDF-RT. Proc 17th ISMB'2014 SIG meeting "Bio-Ontologies" 2014
  • Bodenreider O. Evaluating the Quality and Interoperability of Biomedical Terminologies Technical Report to the LHNCBC Board of Scientific Counselors April 2018
  • Edinger T, Demner-Fushman D, Cohen AM, Bedrick S, Hersh W. Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval. AMIA Annu Symp Proc. 2018 Apr 16;2017:660-669. eCollection 2017.
  • Huang X, Lin J, Demner-Fushman D. Evaluation of PICO as a knowledge representation for clinical questions AMIA Annu Symp Proc. 2006:359-63.
  • Bodenreider O, Mitchell JA, McCray AT. Evaluation of the UMLS as a Terminology and Knowledge Resource for Biomedical Informatics Proc AMIA Symp. 2002:61-65.
  • Zhang S, Bodenreider O, Golbreich C. Experience in Reasoning with the Foundational Model of Anatomy in OWL DL Pac Symp Biocomput. 2006:200-11
  • Erdogan H, Erdem E, Bodenreider O. Exploiting UMLS semantics for checking semantic consistency among UMLS concepts. Stud Health Technol Inform. 2010;160(Pt 1):749-53.
  • Fu GE, Bolton NQ, Rosinach LI, Furlong V, Nguyen AP, Sheth O, Bodenreider O, Dumontier M. Exposing provenance metadata using different RDF models. Proceedings of the International Conference on Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2015), 2015: p. (electronic proceedings: http://www.swat4ls.org/wp-content/uploads/2015/10/SWAT4LS_2015_paper_11.pdf).
  • Zou J, Le DX, Thoma GR. Extracting a Sparsely-Located Named Entity from Online HTML Medical Articles Using Support Vector Machine Proc SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:6815OP(1-10)
  • Schadow G, McDonald CJ. Extracting structured information from free text pathology reports. AMIA Annu Symp Proc. 2003:584-8.
  • Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ, Aronson AR. Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. Proc TREC 2006, 569-76.
  • Bodenreider O, Aubry M, Burgun A. From Functional Similarity Among Gene Products to Dependence Relations Among Gene Ontology Terms Proc SOFG, 2004:53.
  • Mitchell JA, McCray AT, Bodenreider O. From Phenotype to Genotype: Navigating the Available Information Resources Proc AMIA Symp. 2002;:1109.
  • Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB. Frontiers of biomedical text mining: current progress Brief Bioinform. 2007 Sep;8(5):358-75. Epub 2007 Oct 30.
  • Wang H, Azuaje F, Bodenreider O, Dopazo J. Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB'2004) 2004:25-31.
  • Azuaje FJ, Bodenreider O, Wang H, Dopazo J. Gene Ontology-Driven Similarity for Gene Expression Correlation Analysis Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:47.
  • Sehgal AK, Srinivasan P, Bodenreider O. Gene Terms and English Words: An Ambiguous Mix Proc of the SIGIR 2004 Workshop on Search and Discovery in Bioinformatics 2004.
  • Lin J, Karakos D, Demner-Fushman D, Khudanpur S. Generative Content Models for Structural Analysis of Medical Abstracts Proc 2006 BioNLP'06. June 2006, New York City, New York
  • Jing X, Cimino JJ. Graphical methods for reducing, visualizing and analyzing large data sets using hierarchical terminologies. AMIA Annu Symp Proc. 2011;2011:635-43. Epub 2011 Oct 22.
  • Bodenreider O, Mitchell JA. Graphical Visualization and Navigation of Genetic Disease Information AMIA Annu Symp Proc. 2003:792.
  • Xu J, Fung KW. Handling age specification in the SNOMED CT to ICD-10-CM cross-map. AMIA Annu Symp Proc. 2012;2012:1014-22. Epub 2012 Nov 3.
  • Sabir TF, Hauser SE, Thoma GR. Historical Author Affiliations Assist Verification of Automatically Generated MEDLINE Citations AMIA Annu Symp Proc. 2006:1082
  • Zhang S, Bodenreider O. Hybrid Alignment Strategy for Anatomical Ontologies Results of the 2007 Ontology Alignment Contest Proc OAEI 2007:139-149
  • Kim IC, Le DX, Thoma GR. Hybrid approach combining contextual and statistical information for identifying and statistical information for identifying MEDLINE citation terms. Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150P(1-9)
  • Kim IC, Le DX, Thoma GR. Identification of "comment-on sentences" in online biomedical documents using support vector machines. Proc. SPIE conference on Document Recognition and Retrieval, 6500:65000O (1-8), San Jose, January 2007.
  • Kim J, Le DX, Thoma GR. Identification of Investigator Name Zones Using SVM Classifiers and Heuristic Rules. 12th international Conference on Document Analysis and Recognition (ICDAR). Washington D.C., August 2013.
  • Mougin F, Bodenreider O, Burgun A. Identifying anatomical concepts associated with ICD10 diseases. Proceedings of the 8th Conference on Terminology and Artificial Intelligence (TIA 2009), 2009: p. (electronic proceedings: http://www.irit.fr/TIA09/start_here.htm).
  • Zeng QT, Tse T, Crowell J, Divita G, Roth L, Browne AC. Identifying Consumer-Friendly Display (CFD) Names for Health Concepts AMIA Annu Symp Proc. 2005:859-63
  • Bodenreider O. Identifying missing hierarchical relations in SNOMED CT from logical definitions based on the lexical features of concept names. Proceedings of the 6th International Conference on Biomedical Ontology (ICBO 2016), 2016: p. (electronic proceedings: http://ceur-ws.org/Vol-1747/IT601_ICBO2016.pdf).
  • Bodenreider O, Zweigenbaum P. Identifying Proper Names in Parallel Medical Terminologies Stud Health Technol Inform. 2000;77:443-7
  • Kim I, Le DX, Thoma GR. Identifying “comment-on” citation data in online biomedical articles using SVM-based text summarization technique. Proc. Int’l Conf. Artificial Intelligence (ICAI’12), vol. 1, pp. 431-437, Las Vegas, July 2012.
  • Zeng K, Bodenreider O, Nelson SJ. Implementing RxNav, a RxNorm Browser Proc of Medical Informatics Europe 2005 (CD-ROM) 2005:1268.
  • Finnell JT, Overhage JM, McDonald CJ. In support of emergency department health information technology. AMIA Annu Symp Proc. 2005:246-50.
  • Bodenreider O, Azuaje F. Incorporating Ontology-Driven Similarity Knowledge Into Functional Genomics: An Exploratory Study Proceedings of the 2004 IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE-2004) 2004:317-324.
  • Kim J, Le DX, Thoma GR. Inferring Grant Support Types From Online Biomedical Articles 22nd IEEE ISCBMS. Albuquerque, NM. August 2009
  • Russler DC, Schadow G, Mead C, Snyder T, Quade LM, McDonald CJ. Influences of the Unified Service Action Model on the HL7 Reference Information Model. Proc AMIA Symp. 1999:930-4.
  • Cardillo E, Hernandez, Jr G, Bodenreider O. Integrating consumer-oriented vocabularies with selected professional ones from the UMLS using Semantic Web Technologies. Proceedings of the eHealth 2010 conference, 2010: p. (paper 10579 - electronic proceedings).

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